Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachipleistophora_20hominis_20[genbank_20GCA_5F000316135.1_202013- 01-04] 310 sequences; 8,498,182 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq168 165 9e-36 seq242 102 9e-17 >seq168 Length=41216 Score = 165 bits (182), Expect = 9e-36 Identities = 301/434 (69%), Gaps = 5/434 (1%) Strand=Plus/Minus Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211 || || || ||||| || ||||| |||| || | ||||||||||| ||||||||| ||| Sbjct 23859 CCTGTGCCAATACCATCAGCACCGTTCACGAGCACCATCGGCACGATAGGAACGTAAAAC 23800 Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTCGGA 117271 ||||| | | || ||| ||||||| ||| || || | |||| || ||| Sbjct 23799 GATGGCTCTATTTTCATGTTGTCCTCCGTGATGTAGTTTAGAAGGGCATCATCGCTCTCC 23740 Query 117272 TCGAATATGTTCTTGGTCCACGGT-GCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGC 117330 ||||||| || || | | | || ||| ||||| |||||||| | || || Sbjct 23739 ACGAATATCTTGCGTGTG-ATGCTCGCCAGGTTGGTGAAGATGTAACGCGCAGACGCGGC 23681 Query 117331 ATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTC-GGCTCCAAGAGGTTCAGGT 117389 ||||||||| || || ||||| ||||| || || ||| ||| | ||||| | || Sbjct 23680 ATCCTTGCCGCCCTGCAGGCGCGTGCCGAACTG-CCCCTCAGGCATGAGCAGGTTGATGT 23622 Query 117390 TGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCAC 117449 ||||| |||||| || | || || | |||| ||||| || || || |||| | Sbjct 23621 TGTTGCTGCCCACGAAATCGTGTGCAAGTTTGATGATCGTCTGCTGCAGACTTACCTCGC 23562 Query 117450 CATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTG 117509 | || || ||||||| ||||| || ||||||||| | ||||| || ||||| || |||| Sbjct 23561 CGTGATGGTACGCCGAGTGCTCGGCAACGTAGCCCACAAGCTGTGCAACCTTAATCTCTG 23502 Query 117510 ACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCAT 117569 | | |||||| |||| | ||| || |||||||| ||||| | ||||| | || | Sbjct 23501 ATTTAAGGTTCCTCTTAAAACAGCAGTACATCACCTTCCGCTGTCCCGGCTTAAACCCGT 23442 Query 117570 CCGCCACGTGAGGG 117583 || | ||| ||||| Sbjct 23441 CCACAACG-GAGGG 23429 Score = 161 bits (178), Expect = 1e-34 Identities = 299/437 (68%), Gaps = 9/437 (2%) Strand=Plus/Minus Query 151874 ATCCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAA 151933 |||| || || || || || |||||||| || || | ||||||||| ||||| |||||| Sbjct 23861 ATCCTGTGCCAATACCATCAGCACCGTTCACGAGCACCATCGGCACGATAGGAACGTAAA 23802 Query 151934 ACTCCGGCTCCA----CCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCA 151989 || ||||| | | ||||| || ||| | | ||| || | || || || || Sbjct 23801 ACGATGGCTCTATTTTCATGTTGTCC----TCCGTGATGTAGTTTAGAAGGGCATCATCG 23746 Query 151990 GCCGGATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTG 152049 | |||||||| || || || || ||||||||||| || | Sbjct 23745 CTCTCCACGAATATCTTGCGTGTGATGCTCGCCAGGTTGGTGAAGATGTAACGCGCAGAC 23686 Query 152050 GCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTG 152109 || ||||||||||| || ||| ||||| || ||||| || ||| ||| |||||| Sbjct 23685 GCGGCATCCTTGCCGCCCTGCAGGCGCGTGCCGAACTGCCCCTCAGGCATGAGCAGGTTG 23626 Query 152110 AGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCT 152169 | ||||||| ||||||||||| || || | || | ||||| ||||||||| | Sbjct 23625 ATGTTGTTGCTGCCCACGAAATCGTGTGCAAGTTTGATGATCGTCTGCTGCAGACTTACC 23566 Query 152170 TCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATG 152229 || ||||| || ||||||| ||||| || | ||| ||| | | ||| || ||||| || Sbjct 23565 TCGCCGTGATGGTACGCCGAGTGCTCGGCAACGTAGCCCACAAGCTGTGCAACCTTAATC 23506 Query 152230 TCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAA 152289 || | | |||||| |||| | |||| ||| |||||||| ||||| || || || Sbjct 23505 TCTGATTTAAGGTTCCTCTTAAAACAGCAGTACATCACCTTCCGCTGTCCCGGCTTAAAC 23446 Query 152290 CCGTCCACCACGTGAGG 152306 |||||||| ||| |||| Sbjct 23445 CCGTCCACAACG-GAGG 23430 Score = 111 bits (122), Expect = 2e-19 Identities = 266/399 (67%), Gaps = 4/399 (1%) Strand=Plus/Minus Query 152770 TTGAGGACCAAGCCCTTGATGTGCGATCCGTCAAGATCCGCGTCGGTCATGATCATCAGA 152829 |||| || | ||||||||||||||| ||||| |||| || ||||| || || | Sbjct 22899 TTGATGATAAGGCCCTTGATGTGCGAGCCGTCGTGATCTTGATCTGTCATTATTATGACG 22840 Query 152830 CGACCGTAGCGCAGG-TCAC-GTAGTGACCCGTAGACCTTTCCATGTTGAAGCCCGAGGA 152887 | ||||| |||||| || | || ||| |||| |||| || || ||| | || | Sbjct 22839 TGGCCGTACCGCAGGCTCTCCGT--TGATGTGTAGTCCTTGTGGTGCTGCAGCGCAAGTA 22782 Query 152888 TCTTTTTGAGGTTGGAAAATTCCTCATTATCGGTCACCTGTTTCACCGTGGCATCCCGAA 152947 | || || || ||| | ||||| || || | | ||| || | || || || | Sbjct 22781 TTTTCTTCAGATTGTTGAGCTCCTCGTTCTCCATGATCTGCTTGTGGTTCGCCTCGCGCA 22722 Query 152948 CATTGCGCGGCTTTCCCCGGAGTGGAAACACGCCGAACGCGTTGCGGCCTACAACGCTCA 153007 | || || |||| || || || |||||||||||| | || | ||| || || || Sbjct 22721 CGTTCAGCAGCTTGCCGCGCAGAGGAAACACGCCGTAGTAGTCCCTGCCAACCACCGACA 22662 Query 153008 GACCGGCAATAGCAAGGGCTTTCGCCGAGTCACCCTCGGTGATAATAAGCGTACAGTCGT 153067 | ||| || ||||| | || |||||||| |||||||||| ||| |||| || | | Sbjct 22661 GGCCGCTTATGGCAAGCGTCTTGGCCGAGTCTCCCTCGGTGAGAATGAGCGAGCACTTCT 22602 Query 153068 GAGACCGATGAGTACCGGCCCAGTTGGCGTCGTCAAGCTTGGGGATTCCCGTGATCCTGC 153127 | || | || || ||| ||| || ||| ||||| || || || || ||| Sbjct 22601 GCGAGTTCTTCGTGCCTGCCAGGTTCGCATCGCTCAGCTTTTCTATGCCGGTTATTTTGC 22542 Query 153128 TTTTCTTAGAGCCGTCGGTTTTCTTCAGTTCCTTGGTCA 153166 | ||||||| ||||| |||||||| || | |||| ||| Sbjct 22541 TGCTCTTAGACCCGTCCGTTTTCTTGAGCTGCTTGCTCA 22503 Score = 105 bits (116), Expect = 7e-18 Identities = 197/287 (69%), Gaps = 2/287 (1%) Strand=Plus/Minus Query 118013 AGCCCCTTGATATGGGAACCGTCCAGATCCGCATCGGTCATGATCATCAGGCGGCCGTAC 118072 || |||||||| || || ||||| |||| ||| ||||| || || | | |||||||| Sbjct 22890 AGGCCCTTGATGTGCGAGCCGTCGTGATCTTGATCTGTCATTATTATGACGTGGCCGTAC 22831 Query 118073 CGTAAATCTCTCAGG-GAGTTATAAACCTTACCATGTTGGAGCCCGAGGATCTTTTTAAG 118131 || | ||||| | || | || |||| || || ||| | || || || || || Sbjct 22830 CGCAGG-CTCTCCGTTGATGTGTAGTCCTTGTGGTGCTGCAGCGCAAGTATTTTCTTCAG 22772 Query 118132 GTTGGAAAATTCCTCATTTTCCGTCACCTGTTTTATGGTGGCGTCCCGAACGTTGCGCGG 118191 ||| | ||||| || ||| | | ||| || | | || || || ||||| || | Sbjct 22771 ATTGTTGAGCTCCTCGTTCTCCATGATCTGCTTGTGGTTCGCCTCGCGCACGTTCAGCAG 22712 Query 118192 CTTACCCCGCAGTGGAAACACGCCAAACTTGTCACGGCCCACAACGCTCAAGCCGGCAAT 118251 ||| || ||||| ||||||||||| | | ||| | ||| || || || |||| || Sbjct 22711 CTTGCCGCGCAGAGGAAACACGCCGTAGTAGTCCCTGCCAACCACCGACAGGCCGCTTAT 22652 Query 118252 AGCAAGGGCCTTCGCCGAGTCACCCTCGGTAATAATAAGAGTGCACT 118298 ||||| | ||| |||||||| |||||||| | ||| || | ||||| Sbjct 22651 GGCAAGCGTCTTGGCCGAGTCTCCCTCGGTGAGAATGAGCGAGCACT 22605 >seq242 Length=24773 Score = 102 bits (112), Expect = 9e-17 Identities = 335/511 (66%), Gaps = 11/511 (2%) Strand=Plus/Minus Query 74762 ATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCC 74821 |||| ||||||||| | |||||| || || ||||||| ||| || |||||||| || Sbjct 12162 ATGCAGGCCTTCATCACGCGATATCAACTCGTTGGAAAACGTAAGACCGGGCATAAGACC 12103 Query 74822 ACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACA 74881 ||| ||||||| ||| ||||||| ||| || || |||||||| | || || ||||| Sbjct 12102 ACGTTTCTTCAGCCAGAAGATGGACGCGAACGATCCGCTGAAGAACAGTCCCTCCACACA 12043 Query 74882 CGCAAAGGCGACA--AGGCGTTGCGCGAACGGTG-CATCGGAAGTCATCCAAGTCTGAGC 74938 |||||| || | | | ||||||| | | | | | | | | |||| | | ||| Sbjct 12042 CGCAAACGCAATAACACGCGTTGCAAAATCAGAGTCCTTGTCGTTTATCC-ATTTAAAGC 11984 Query 74939 -CCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCTTGCCT 74997 ||| || || || | || |||| | || | ||||| | ||| ||| | | Sbjct 11983 ACCACTCCGCCTTCCTCTTCACCGTGTTTATGTTAGCAATCGCATTGAACAGGAAGTCTT 11924 Query 74998 TCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCG 75057 |||| || | ||||||| | ||||||||| | |||||| | || || | Sbjct 11923 TCTCCTCCTGGTCCTTGATATACGTGTCAATCAGCAACGAGTACATTTCGCTGTGCACGT 11864 Query 75058 ACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTG 75117 ||| | | |||| | ||||||| | |||||||| || |||||| || || Sbjct 11863 TCTCAATCATAATCTGGAAGCCGTAGAAGCAGCGCGCCTCCTTAAGCTGTACCTCACGTG 11804 Query 75118 AAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTA 75177 | || ||| | || || | || ||||||||||| || ||||| || || || | Sbjct 11803 AGAAGTTCTCCAGCAGGTTTTCGTTTACAATGCCGTCCGATGCTGCGAAGAACGCAAGAA 11744 Query 75178 CCATTTTGATA--AAGTGGCGCTCATCGTCAG-TGAGTTTGTCCCAATCCTTCAGGTCCC 75234 | | |||| || ||||||||||| ||| | || ||| ||| || | | ||| Sbjct 11743 C--GTACGATATGAAATGGCGCTCATC-ACAGTTCAGCCTGTTCCAGTCATCAATGTCTT 11687 Query 75235 CCGCCAAATCAATCTCCTCGACCGTCCAGAA 75265 | || ||||| ||| || || |||||||| Sbjct 11686 TGGACAGATCAACCTCTTCAACTGTCCAGAA 11656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547213879538000