Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachipleistophora_20hominis_20[genbank_20GCA_5F000316135.1_202013- 01-04] 310 sequences; 8,498,182 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq168 140 4e-28 seq155 134 2e-26 seq303 125 8e-24 >seq168 Length=41216 Score = 140 bits (154), Expect = 4e-28 Identities = 269/394 (68%), Gaps = 2/394 (1%) Strand=Plus/Plus Query 31156 AAGGAGCTCAAGAAAACAGATGGGTCCAAAAAGTCTCGAATTACGGGAATTCCGAAGCTC 31215 ||| ||||||||||||| || ||||| || | ||| || || || ||||| Sbjct 22508 AAGCAGCTCAAGAAAACGGACGGGTCTAAGAGCAGCAAAATAACCGGCATAGAAAAGCTG 22567 Query 31216 GACGACGCCAACTGGGCCGGTACCCACAAGTCGCACGAGTGCACGCTTATTATTACCGAG 31275 ||| || ||| ||| || || | || ||||| ||||| |||| ||| | |||||| Sbjct 22568 AGCGATGCGAACCTGGCAGGCACGAAGAACTCGCAGAAGTGCTCGCTCATTCTCACCGAG 22627 Query 31276 GGTGACTCGGCAAAGGCGCTTGCTATTGCTGGCTTGAGTGTTGTGGGGCGCAATGCGTTC 31335 || |||||||| ||| ||||||| || ||| || || || || | | | | Sbjct 22628 GGAGACTCGGCCAAGACGCTTGCCATAAGCGGCCTGTCGGTGGTTGGCAGGGACTACTAC 22687 Query 31336 GGGGTGTTTCCGCTCCGAGGCAAGCCGCGTAACGTTCGTGACGCCTCCGTTAAACAGGTT 31395 || |||||||| || || ||||||| || ||||| || || || | || ||| | Sbjct 22688 GGCGTGTTTCCTCTGCGCGGCAAGCTGCTGAACGTGCGCGAGGCGAACCACAAGCAGATC 22747 Query 31396 ACGGATAATGAAGAGTTTTCCAACCTGAAAAAGATCCTCGGGCTTCAGCATGGCAAGGTA 31455 | ||| || || ||| | ||| ||||| || || || | ||| ||||| ||||| Sbjct 22748 ATGGAGAACGAGGAGCTCAACAATCTGAAGAAAATACTTGCGCTGCAGCACCACAAGGAC 22807 Query 31456 TATAATTCA-CTGAGAGAATTGCGGTACGGTCGCCTCATGATTATGACCGACGCAGATCT 31514 || | ||| | ||||| | ||||||||| | | |||| || ||||| || ||||| Sbjct 22808 TACACATCAACGGAGAGCCT-GCGGTACGGCCACGTCATAATAATGACAGATCAAGATCA 22866 Query 31515 CGACGGCAGTCACATCAAGGGTCTTGTCCTAAAT 31548 ||||||| ||||||||||| ||| || | ||| Sbjct 22867 CGACGGCTCGCACATCAAGGGCCTTATCATCAAT 22900 Score = 107 bits (118), Expect = 2e-18 Identities = 209/306 (68%), Gaps = 2/306 (1%) Strand=Plus/Plus Query 31977 CGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAA 32036 ||| | |||||| | ||||| |||||| |||||||| ||| ||| | |||| ||| Sbjct 23434 CGTTGTGGACGGGTTTAAGCCGGGACAGCGGAAGGTGATGTACTGCTGTTTTAAGAGGAA 23493 Query 32037 CCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTA 32096 ||| || || ||||| || ||||| ||||||||| || ||||| |||| || Sbjct 23494 CCTTAAATCAGAGATTAAGGTTGCACAGCTTGTGGGCTACGTTGCCGAGCACTCGGCGTA 23553 Query 32097 TCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGG 32156 || |||||||||| || ||| || || |||| ||||| || | || || || Sbjct 23554 CCATCACGGCGAGGTAAGTCTGCAGCAGACGATCATCAAACTTGCACACGATTTCGTGGG 23613 Query 32157 TGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGG 32216 || ||| | ||| | ||| ||| || ||||| || || || || || || Sbjct 23614 CAGCAACAACATCAACCTGCTCATGCCTGAGGGGCAGTTCGGCACGCGCCTGCAGGGCGG 23673 Query 32217 CAAGGATGCTGCGAGCTCCCGTTACATCTTCACCCGTCTCGC-ACCTTCGACGCGCAAGA 32275 ||||||||| ||| | ||||||||||||||| || || | | || || ||||||| Sbjct 23674 CAAGGATGCCGCGTCTGCGCGTTACATCTTCACCAACCTGGCGAGCATC-ACACGCAAGA 23732 Query 32276 TTTTCG 32281 | |||| Sbjct 23733 TATTCG 23738 >seq155 Length=106166 Score = 134 bits (148), Expect = 2e-26 Identities = 147/193 (76%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||||||||| ||||| ||||| |||||||| || || |||||||| ||| | Sbjct 85476 AATGCAAATCTTTGTAAAGACCCTTACGGGCAAGACCATCACGCTTGAGGTAGAGCCTTC 85417 Query 27465 TGATAGCAT-TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523 || | || ||| | | || | ||||||||||||||||||||| || ||||| || | Sbjct 85416 AGACACGATATGCGACGTGAAAAG-TAAAATTCAGGACAAGGAGGGCATACCTCCCGATC 85358 Query 27524 AGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATA 27583 |||| || || || |||||||| ||||| ||||| |||| ||||| || || || | Sbjct 85357 AGCAACGGCTTATCTTTGCTGGCAAGCAGCTCGAAGATGGACGTACTCTTAGTGATTACA 85298 Query 27584 ATGTCCAAAAGGA 27596 | || || ||||| Sbjct 85297 ACGTGCAGAAGGA 85285 >seq303 Length=146937 Score = 125 bits (138), Expect = 8e-24 Identities = 145/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || ||||| || || ||||| || ||||| || ||||| || || Sbjct 97629 AATGCAAATATTCGTAAAGACACTCACAGGCAAAACAATTACGCTCGAGGTGGAATCGTC 97570 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | || | |||| | ||||| || || |||||||||||||| || || || || || Sbjct 97569 CGACACAATCGAAAATGTAAAGGCGAAGATACAGGACAAGGAGGGGATACCGCCCGATCA 97510 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATA 27583 ||| || || || |||||||| ||||| || ||||||| || || || ||| ||||||| Sbjct 97509 GCAACGGCTCATATTTGCTGGGAAGCAGCTTGAGGATGGACGGACACTGAGC-GACTATA 97451 Query 27584 ATGTCCAAAAGGA 27596 | | || ||||| Sbjct 97450 ACATACAGAAGGA 97438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570308190047200