Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachipleistophora_20hominis_20[genbank_20GCA_5F000316135.1_202013- 01-04] 310 sequences; 8,498,182 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq168 150 4e-31 seq303 129 1e-24 seq155 104 5e-17 >seq168 Length=41216 Score = 150 bits (166), Expect = 4e-31 Identities = 331/494 (67%), Gaps = 4/494 (1%) Strand=Plus/Minus Query 273623 CCAACCGGTGCCAATACCGGAAGAACCATTCACCAGAATACTCGGGATAATTGGGACATA 273682 ||| || ||||||||||| || ||| ||||| || | |||| | || || || || Sbjct 23863 CCATCCTGTGCCAATACCATCAGCACCGTTCACGAGCACCATCGGCACGATAGGAACGTA 23804 Query 273683 ATATTCGGGCTCAATTTTATCACCATCGTCGTAAAGGTACTTCAACAAAGCATCATCCGT 273742 | | ||||| ||||| || || | ||| || | | |||||||| | Sbjct 23803 AAACGATGGCTCTATTTTCATGTTGTCCTCCGTGATGTAGTTTAGAAGGGCATCATCGCT 23744 Query 273743 ATCAACGAAAACCTTTCGCGTCTGAGGATT--CAGTTTCGTGAAAATGTACCTGGCACTC 273800 || ||||| | ||| |||| ||| | | ||| || ||||| ||||| | ||| | Sbjct 23743 CTCCACGAATATCTT--GCGTGTGATGCTCGCCAGGTTGGTGAAGATGTAACGCGCAGAC 23686 Query 273801 GCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGACCCTCGGGCAGTAGCCAGTTT 273860 || |||||||| || ||||| | || || ||||| ||||| |||| ||| ||| Sbjct 23685 GCGGCATCCTTGCCGCCCTGCAGGCGCGTGCCGAACTGCCCCTCAGGCATGAGCAGGTTG 23626 Query 273861 ATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACGATAGTCCCCTGAAGGGATACC 273920 ||||||||||| || ||| |||| || || | || | ||| ||| ||| || |||| Sbjct 23625 ATGTTGTTGCTGCCCACGAAATCGTGTGCAAGTTTGATGATCGTCTGCTGCAGACTTACC 23566 Query 273921 TCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATAACCACTGAACTGAGCAACCTTCACA 273980 |||||||| || || || ||| ||||| | || || | ||| |||||||| | Sbjct 23565 TCGCCGTGATGGTACGCCGAGTGCTCGGCAACGTAGCCCACAAGCTGTGCAACCTTAATC 23506 Query 273981 TCGCTCGTCAAGTTTCGCTTGAATGCGGAATACAACACCTTCCGCTGCGAGGGCTTGAAC 274040 || | | ||| | ||| || | | |||| |||||||||||| ||||| ||| Sbjct 23505 TCTGATTTAAGGTTCCTCTTAAAACAGCAGTACATCACCTTCCGCTGTCCCGGCTTAAAC 23446 Query 274041 CCATCAACGACCGATGGAATACTGCGTTCCAAATCATACCGAGAGAACAAAATCAGTTCC 274100 || || || || || || || ||||| | || | ||||||||||||||| || Sbjct 23445 CCGTCCACAACGGAGGGTATGCTGCGAACGTTGTCCGCCATAGAGAACAAAATCAGCTCT 23386 Query 274101 TTGTCAATGAAGTC 274114 |||| |||||||| Sbjct 23385 TTGTTGATGAAGTC 23372 >seq303 Length=146937 Score = 129 bits (142), Expect = 1e-24 Identities = 157/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 282888 AGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCC 282947 || |||| || | ||| || || || || ||||| ||||| || || || |||||| Sbjct 97417 AGCACCAAGTGCAGCGTACTCTCCTTCTGTATGTTATAGTCGCTCAGTGTCCGTCCATCC 97476 Query 282948 TCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCT 283007 || || || ||||| ||||| || | ||||| || || ||| || ||||||||||| Sbjct 97477 TCAAGCTGCTTCCCAGCAAATATGAGCCGTTGCTGATCGGGCGGTATCCCCTCCTTGTCC 97536 Query 283008 TGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTC 283067 || ||||| || ||||| | ||||| ||||| || | ||| || ||||| || || || Sbjct 97537 TGTATCTTCGCCTTTACATTTTCGATTGTGTCGGACGATTCCACCTCGAGCGTAATTGTT 97596 Query 283068 TTACCCGTCAAAGTCTTAACGAATATCTGCATTT 283101 || || || | ||||| |||||||| ||||||| Sbjct 97597 TTGCCTGTGAGTGTCTTTACGAATATTTGCATTT 97630 >seq155 Length=106166 Score = 104 bits (114), Expect = 5e-17 Identities = 150/207 (72%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 282897 TGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGT 282956 || ||||| || || || || | |||||| ||| ||| || || ||||| || || || Sbjct 85273 TGCAACGTACTCTCCTTCTGCACGTTGTAATCACTAAGAGTACGTCCATCTTCGAGCTGC 85332 Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || |||||||| | ||||| || || || || ||||||||||| || || ||| Sbjct 85333 TTGCCAGCAAAGATAAGCCGTTGCTGATCGGGAGGTATGCCCTCCTTGTCCTGAAT-TTT 85391 Query 283017 GCTTTT-ACG--GTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCC 283073 ||||| ||| | || || ||||| |||| || || || || ||||| ||||| ||| Sbjct 85392 ACTTTTCACGTCGCAT--ATCGTGTCTGAAGGCTCTACCTCAAGCGTGATGGTCTTGCCC 85449 Query 283074 GTCAAAGTCTTAACGAATATCTGCATT 283100 || | ||||| || || || |||||| Sbjct 85450 GTAAGGGTCTTTACAAAGATTTGCATT 85476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046735042482740