Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachipleistophora_20hominis_20[genbank_20GCA_5F000316135.1_202013- 01-04] 310 sequences; 8,498,182 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq303 113 4e-20 seq155 95.1 1e-14 >seq303 Length=146937 Score = 113 bits (124), Expect = 4e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||||| |||||||| ||||||||||| |||||||||||| || || || | || || Sbjct 97419 CACCAAGTGCAGCGTACTCTCCTTCTGTATGTTATAGTCGCTCAGTGTCCGTCCATCCTC 97478 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 |||||||| || || ||||| || || || || || | || | | |||||||||| | Sbjct 97479 AAGCTGCTTCCCAGCAAATATGAGCCGTTGCTGATCGGGCGGTATCCCCTCCTTGTCC-T 97537 Query 41773 GATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831 | | || || | || | | |||||| ||| |||||||| | ||| || |||| Sbjct 97538 GTATCTTCGCCTTTACATTTTCGATTGTGTCGGACGATTCCACCTCGAGCGTAATTGTTT 97597 Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || || || ||||||||||| || ||||| Sbjct 97598 TGCCTGTGAGTGTCTTTACGAATATTTGCAT 97628 >seq155 Length=106166 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 41660 TGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGC 41719 |||| ||| ||||||||||| | ||| || || || || || | || ||||||||| Sbjct 85273 TGCAACGTACTCTCCTTCTGCACGTTGTAATCACTAAGAGTACGTCCATCTTCGAGCTGC 85332 Query 41720 TTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTT 41779 ||||| || || || || || || || || | || | || |||||||||| ||| |||| Sbjct 85333 TTGCCAGCAAAGATAAGCCGTTGCTGATCGGGAGGTATGCCCTCCTTGTCC-TGAATTTT 85391 Query 41780 TGCTTCAACGACG-ACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGT 41838 || ||| || | | ||||| | ||| ||||| | ||| || || || ||||| Sbjct 85392 ACTTTTCACGTCGCATATCGTGTCTGAAGGCTCTACCTCAAGCGTGATGGTCTTGCCCGT 85451 Query 41839 CAGCGTCTTTACGAAAATCTGCAT 41862 || |||||||| || || ||||| Sbjct 85452 AAGGGTCTTTACAAAGATTTGCAT 85475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462302208572000