Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vavraia_20culicis_20subsp._20floridensis_20[genbank_20GCA_5F00019279 5.1_202011-03-22] 379 sequences; 6,118,689 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq10 127 4e-24 >seq10 Length=142875 Score = 127 bits (140), Expect = 4e-24 Identities = 339/512 (66%), Gaps = 12/512 (2%) Strand=Plus/Minus Query 281571 GGAATGTTAGTAGACCAACCGGTTCCAATACCACTTGAACCATTTACCAAAATACTCGGG 281630 || || || || |||| || || ||||||||| | ||| || || | | | || Sbjct 35241 GGTATCTTGGTCAACCACCCCGTACCAATACCATCAGCACCGTTCACAAGCACCATTGGC 35182 Query 281631 ATAATAGGTACATAACATTCTGGTTCAATTTTATCACCATCATCATACAAATACTTCAGA 281690 | ||||| || ||| || | ||||| ||||| ||| || | ||| |||||| Sbjct 35181 ACGATAGGAACGTAAAATGCAGGTTCTATTTTCAGGTTATCCTCTATGATATAATTCAGA 35122 Query 281691 AGGTTATCATCTGTATCGACGAAAACCTGTCGCGTCTTAGGGTTCAGTTTCGTGAAGATA 281750 || |||||| | || ||||| | || ||| || || ||| || || || || Sbjct 35121 AGAGCATCATCGCTCTCTACGAATATCTTTCGGGTAATATTCGCCAGATTTGTAAAAATG 35062 Query 281751 TACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCGACCCAAACTGACCCTCCGGC 281810 || | ||| || ||||| ||||| ||||| | || || || ||||| | || Sbjct 35061 TAACGTGCGGAAGCCGCATCTTTGCCACCTTGCAGGCGCGTGCCGAATTGACCGGCTGGT 35002 Query 281811 AACAACCAG-TTAATGTTATTGCTCCCGACGTAATCCTGAGCCAGGTTGACGATTGTCCC 281869 ||| ||| || | || |||||||| || |||| || || || |||| || ||| Sbjct 35001 T-CAAGCAGGTTGACATTGTTGCTCCCAACAAAATCATGTGCAAGCTTGATAATCGTCTG 34943 Query 281870 CTGAAGCGATACCTCACCGTGGTGATAGGCGCTGTGTTCGGCAACATAACCACTGAACTG 281929 ||| | | ||| ||||||||||| || ||| |||||||||||||| || ||| Sbjct 34942 CTGCAAACTCATCTCGCCGTGGTGATATGCCGAGTGCTCGGCAACATAACCCACGAGCTG 34883 Query 281930 TGCTACCTTCACGTCTGATGTCAAGTTGCGTTTGAAAGC-GCAATATAATACTTTTCGTT 281988 || ||||| | || ||| | ||| | | | | ||||| || || | |||||||| | Sbjct 34882 GGCAACCTTAATCTCGGAT-TTAAGATTCCTCTTAAAGCAACAGTACATCACTTTTCGCT 34824 Query 281989 GAGAAGGCTTGAAACCATCAACGACAGACGGAATGCTGCG----TTCCAGGTCATACCGC 282044 | |||||| |||||||| || | || || ||||| || || | |||| Sbjct 34823 GTCCAGGCTTAAAACCATCCACCATGGAAGGTATGCTACGCACATTATCTGCCATA---- 34768 Query 282045 GAGAACAAAATAAGTTCCTTGTCAATGAAGTC 282076 ||||||||||| || || |||| ||||||||| Sbjct 34767 GAGAACAAAATGAGCTCTTTGTTAATGAAGTC 34736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057818863272770