Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vavraia_20culicis_20subsp._20floridensis_20[genbank_20GCA_5F00019279
5.1_202011-03-22] 379 sequences; 6,118,689 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq5 152 5e-32
seq13 118 1e-21
seq57 109 6e-19
>seq5
Length=183138
Score = 152 bits (168), Expect = 5e-32
Identities = 379/570 (66%), Gaps = 4/570 (1%)
Strand=Plus/Plus
Query 116623 ACAATACCCGGACATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGA 116682
|||| ||| ||| | |||| ||||||||| |||| | || |||||||| || ||
Sbjct 59350 ACAA-ACCAGGATGTATGGCAGATGTACAAACAGGCATTATCATCATTCTGGACAGTGGA 59408
Query 116683 GGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCA 116742
|| || || || || ||||| | || ||| | || ||||||| | ||||||||
Sbjct 59409 AGAAGTTGATCTATCAAAGGATATTGATGATTGGAACCGGTTGAACGGAGATGAGCGCCA 59468
Query 116743 TTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCT 116802
||| || | ||||||| || || || || || ||||| ||||| |||||||||||
Sbjct 59469 TTTTATATCGTACGTGCTCGCATTCTTTGCTGCATCGGACGGTATCGTGAACGAGAATCT 59528
Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862
| ||| ||| | | ||||||||| | |||||||| ||||| |||||||||||
Sbjct 59529 CTTGGAGAACTTCTCGCGCGAGGTGCAGCTCAAAGAGGCGCGCTGCTTTTACGGCTTTCA 59588
Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCG 116922
||| || |||||||||||| |||||||| ||| || ||||| |||||| |
Sbjct 59589 GATTATGATCGAGAACGTGCACAGTGAAATGTACTCGTTGCTGATCGATACGTACATTAA 59648
Query 116923 CTCTTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGA 116982
| ||| |||||| | | | || || || || | | || | | || ||||
Sbjct 59649 GGATCAGGAAGAGAAGGACTTTCTTTTCAATGCGATTGCCAACAT-CAATACGGTGAAGA 59707
Query 116983 G-AAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041
| ||||| |||||| | ||||| | | ||| | | || | ||
Sbjct 59708 GAAAGGCTGAGTGGTGCTTTAAATGGATAAATGATAAAGATTCTGATTTTGCAACACGTG 59767
Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101
| | || || ||| || ||||| | |||||| || ||||| | || || |
Sbjct 59768 TTATTGCGTTTGCGTGTGTTGAGGGGCTGTTCTTTAGTGGATCGTTCGCATCTATCTTCT 59827
Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161
|||| || |||||||| || |||||||| || || ||| |||||| | || || | |
Sbjct 59828 GGCTGAAAAAACGCGGTCTTATGCCCGGTCTTACATTCTCTAACGAGTTGATATCACGTG 59887
Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTT 117191
||||||| ||||||| | |||| |||||
Sbjct 59888 ACGAGGGCCTGCATTATCAATTTG-CTGTT 59916
>seq13
Length=120561
Score = 118 bits (130), Expect = 1e-21
Identities = 148/203 (73%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| |||||||||||||| ||||| ||||| || || || | || || || | ||
Sbjct 71965 ATGCAGATATTCGTAAAAACACTCACAGGCAAGACAATAACACTTGAGGTGGAGTCGTCC 71906
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | | |||| || || | ||||| ||||| || || | || |||
Sbjct 71905 GACACCATCGAGAATGTAAAGGCGAAGATACAGGACAAGGAGGGGATACCACCCGATCAG 71846
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
||||||||||| | |||||||| ||||| || || | || || || | |||||| ||
Sbjct 71845 CAACGACTCATATTTGCGGGCAAGCAGCTTGAGGATGGACGGACGCTGAGCGACTATAAT 71786
Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892
|| ||||||||| |||||||||
Sbjct 71785 ATACAGAAGGAGAGCACGCTGCA 71763
>seq57
Length=32437
Score = 109 bits (120), Expect = 6e-19
Identities = 172/243 (71%), Gaps = 4/243 (2%)
Strand=Plus/Minus
Query 40676 AAACGCTCCGAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCG 40735
|||||| || ||||||||||||||| || || |||||||| || ||||| || | |
Sbjct 26131 AAACGCACCCCTTAATGCAAATATTCGTTAAGACACTCACGGGTAAGACCATTACGCTTG 26072
Query 40736 ACGTCGAAGCCACCGACAGCGTGCA--AACGCTCAAGGAAAAAATTCTCGACAAAGAGGG 40793
| ||||| | | |||| || | || | | || | |||||| ||||| |||||
Sbjct 26071 AGGTCGAGCCTTCAGACA-CGATAAGTAATG-TAAAAAATAAAATTAAGGACAAGGAGGG 26014
Query 40794 CATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCAC 40853
||| || | |||||||| || || || | |||||||| ||||| || || | || |
Sbjct 26013 CATTCCTCCTGACCAGCAGCGGCTTATTTTTGCGGGCAAGCAGCTTGAGGATGGACGTAG 25954
Query 40854 CCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGG 40913
|| | || |||||||| ||||||||| ||| ||||||| ||| | | |||||||
Sbjct 25953 TCTGAGTGATTACAACATACAGAAGGAGAGTACGTTGCATCTTGTGCTTAGGCTGAGGGG 25894
Query 40914 CGG 40916
||
Sbjct 25893 AGG 25891
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515216759149040
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