Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vavraia_20culicis_20subsp._20floridensis_20[genbank_20GCA_5F00019279 5.1_202011-03-22] 379 sequences; 6,118,689 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq5 152 5e-32 seq13 118 1e-21 seq57 109 6e-19 >seq5 Length=183138 Score = 152 bits (168), Expect = 5e-32 Identities = 379/570 (66%), Gaps = 4/570 (1%) Strand=Plus/Plus Query 116623 ACAATACCCGGACATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGA 116682 |||| ||| ||| | |||| ||||||||| |||| | || |||||||| || || Sbjct 59350 ACAA-ACCAGGATGTATGGCAGATGTACAAACAGGCATTATCATCATTCTGGACAGTGGA 59408 Query 116683 GGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCA 116742 || || || || || ||||| | || ||| | || ||||||| | |||||||| Sbjct 59409 AGAAGTTGATCTATCAAAGGATATTGATGATTGGAACCGGTTGAACGGAGATGAGCGCCA 59468 Query 116743 TTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCT 116802 ||| || | ||||||| || || || || || ||||| ||||| ||||||||||| Sbjct 59469 TTTTATATCGTACGTGCTCGCATTCTTTGCTGCATCGGACGGTATCGTGAACGAGAATCT 59528 Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 | ||| ||| | | ||||||||| | |||||||| ||||| ||||||||||| Sbjct 59529 CTTGGAGAACTTCTCGCGCGAGGTGCAGCTCAAAGAGGCGCGCTGCTTTTACGGCTTTCA 59588 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCG 116922 ||| || |||||||||||| |||||||| ||| || ||||| |||||| | Sbjct 59589 GATTATGATCGAGAACGTGCACAGTGAAATGTACTCGTTGCTGATCGATACGTACATTAA 59648 Query 116923 CTCTTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGA 116982 | ||| |||||| | | | || || || || | | || | | || |||| Sbjct 59649 GGATCAGGAAGAGAAGGACTTTCTTTTCAATGCGATTGCCAACAT-CAATACGGTGAAGA 59707 Query 116983 G-AAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041 | ||||| |||||| | ||||| | | ||| | | || | || Sbjct 59708 GAAAGGCTGAGTGGTGCTTTAAATGGATAAATGATAAAGATTCTGATTTTGCAACACGTG 59767 Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 | | || || ||| || ||||| | |||||| || ||||| | || || | Sbjct 59768 TTATTGCGTTTGCGTGTGTTGAGGGGCTGTTCTTTAGTGGATCGTTCGCATCTATCTTCT 59827 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| || |||||||| || |||||||| || || ||| |||||| | || || | | Sbjct 59828 GGCTGAAAAAACGCGGTCTTATGCCCGGTCTTACATTCTCTAACGAGTTGATATCACGTG 59887 Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTT 117191 ||||||| ||||||| | |||| ||||| Sbjct 59888 ACGAGGGCCTGCATTATCAATTTG-CTGTT 59916 >seq13 Length=120561 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| |||||||||||||| ||||| ||||| || || || | || || || | || Sbjct 71965 ATGCAGATATTCGTAAAAACACTCACAGGCAAGACAATAACACTTGAGGTGGAGTCGTCC 71906 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | ||||| ||||| || || | || ||| Sbjct 71905 GACACCATCGAGAATGTAAAGGCGAAGATACAGGACAAGGAGGGGATACCACCCGATCAG 71846 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||||||||| | |||||||| ||||| || || | || || || | |||||| || Sbjct 71845 CAACGACTCATATTTGCGGGCAAGCAGCTTGAGGATGGACGGACGCTGAGCGACTATAAT 71786 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 || ||||||||| ||||||||| Sbjct 71785 ATACAGAAGGAGAGCACGCTGCA 71763 >seq57 Length=32437 Score = 109 bits (120), Expect = 6e-19 Identities = 172/243 (71%), Gaps = 4/243 (2%) Strand=Plus/Minus Query 40676 AAACGCTCCGAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCG 40735 |||||| || ||||||||||||||| || || |||||||| || ||||| || | | Sbjct 26131 AAACGCACCCCTTAATGCAAATATTCGTTAAGACACTCACGGGTAAGACCATTACGCTTG 26072 Query 40736 ACGTCGAAGCCACCGACAGCGTGCA--AACGCTCAAGGAAAAAATTCTCGACAAAGAGGG 40793 | ||||| | | |||| || | || | | || | |||||| ||||| ||||| Sbjct 26071 AGGTCGAGCCTTCAGACA-CGATAAGTAATG-TAAAAAATAAAATTAAGGACAAGGAGGG 26014 Query 40794 CATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCAC 40853 ||| || | |||||||| || || || | |||||||| ||||| || || | || | Sbjct 26013 CATTCCTCCTGACCAGCAGCGGCTTATTTTTGCGGGCAAGCAGCTTGAGGATGGACGTAG 25954 Query 40854 CCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGG 40913 || | || |||||||| ||||||||| ||| ||||||| ||| | | ||||||| Sbjct 25953 TCTGAGTGATTACAACATACAGAAGGAGAGTACGTTGCATCTTGTGCTTAGGCTGAGGGG 25894 Query 40914 CGG 40916 || Sbjct 25893 AGG 25891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515216759149040