Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vavraia_20culicis_20subsp._20floridensis_20[genbank_20GCA_5F00019279 5.1_202011-03-22] 379 sequences; 6,118,689 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq57 118 1e-21 seq13 109 6e-19 >seq57 Length=32437 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 42955 GTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAG 43014 ||||||| || | | | ||| | |||||| || |||||||| || || ||||||||| Sbjct 25889 GTCCTCCCCTCAGCCTAAGCACAAGATGCAACGTACTCTCCTTCTGTATGTTGTAATCAC 25948 Query 43015 CCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCG 43074 |||| | || | || || |||||||| || || || || || ||||||||||| | | Sbjct 25949 TCAGACTACGTCCATCCTCAAGCTGCTTGCCCGCAAAAATAAGCCGCTGCTGGTCAGGAG 26008 Query 43075 GCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 43134 | | || |||||||||| | ||||| | ||| | | | |||||| | || | Sbjct 26009 GAATGCCCTCCTTGTCCTTAATTTTATTTTTTACATTACTTATCGTGTCTGAAGGCTCGA 26068 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 | || | ||| ||||| || ||||| || ||||| || || ||||||||| Sbjct 26069 CCTCAAGCGTAATGGTCTTACCCGTGAGTGTCTTAACGAATATTTGCATT 26118 >seq13 Length=120561 Score = 109 bits (120), Expect = 6e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 |||||| |||| ||||||||||| || ||||| || || ||| ||||| | || || Sbjct 71756 CACCAAGTGCAGCGTGCTCTCCTTCTGTATATTATAGTCGCTCAGCGTCCGTCCATCCTC 71815 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| || || ||||||||||| ||||| |||| || | | |||||||||| Sbjct 71816 AAGCTGCTTGCCCGCAAATATGAGTCGTTGCTGATCGGGTGGTATCCCCTCCTTGTCCTG 71875 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 || || || | || | | |||||| ||| ||||| || | || || || || Sbjct 71876 TATCTTCGCCTTTACATTCTCGATGGTGTCGGACGACTCCACCTCAAGTGTTATTGTCTT 71935 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || || || ||||| || || ||||| Sbjct 71936 GCCTGTGAGTGTTTTTACGAATATCTGCAT 71965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571814891014120