Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vavraia_20culicis_20subsp._20floridensis_20[genbank_20GCA_5F00019279 5.1_202011-03-22] 379 sequences; 6,118,689 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq13 125 5e-24 seq57 114 8e-21 >seq13 Length=120561 Score = 125 bits (138), Expect = 5e-24 Identities = 167/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || |||||||| ||||||| ||| | || || || |||||||| || |||||| | Sbjct 71739 CCACCCCGCAGCCTGAGCACCAAGTGCAGCGTGCTCTCCTTCTGTATATTATAGTCGCTC 71798 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| || | || || | ||||||||| || || ||||| || ||||| ||| || Sbjct 71799 AGCGTCCGTCCATCCTCAAGCTGCTTGCCCGCAAATATGAGTCGTTGCTGATCGGGTGGT 71858 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| |||||| ||||| || | || | |||| ||| || || Sbjct 71859 ATCCCCTCCTTGTCCTGTATCTTCGCCTTTACATTCTCGATGGTGTCGGACGACTCCACC 71918 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCTC 34394 || | || || || ||||| ||||| ||||| || || ||||||||||||| Sbjct 71919 TCAAGTGTTATTGTCTTGCCTGTGAGTGTTTTTACGAATATCTGCATCGCTC 71970 >seq57 Length=32437 Score = 114 bits (126), Expect = 8e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || | |||||| ||||| || || || ||||| || |||||||||||||| || Sbjct 25890 TCCTCCCCTCAGCCTAAGCACAAGATGCAACGTACTCTCCTTCTGTATGTTGTAATCACT 25949 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 ||| ||| | || || | ||||||||| || ||||| |||||||||||||| || Sbjct 25950 CAGACTACGTCCATCCTCAAGCTGCTTGCCCGCAAAAATAAGCCGCTGCTGGTCAGGAGG 26009 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||||||| || || | |||| || ||||| || | | ||||| Sbjct 26010 AATGCCCTCCTTGTCCTTAATTTTATTTTTTACATTACTTATCGTGTCTGAAGGCTCGAC 26069 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||| ||||| || || ||||| || || || || || ||||| Sbjct 26070 CTCAAGCGTAATGGTCTTACCCGTGAGTGTCTTAACGAATATTTGCAT 26117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323070507710240