Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vavraia_20culicis_20subsp._20floridensis_20[genbank_20GCA_5F00019279 5.1_202011-03-22] 379 sequences; 6,118,689 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq5 107 2e-18 >seq5 Length=183138 Score = 107 bits (118), Expect = 2e-18 Identities = 295/442 (67%), Gaps = 10/442 (2%) Strand=Plus/Minus Query 15943 TTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATT 16002 ||| || || ||| ||| ||||| ||||||||||| || || || | |||||||| Sbjct 60207 TTTCTGGTACTCAGCAACCCTCTTCTCAAAGAAATTCGTCTTCCCAAACAGCGAAATATT 60148 Query 16003 TTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTA--TCGCAT-CCCAATTCCAA 16059 ||||| |||||||| ||||| || || | ||| | || || ||||| || || Sbjct 60147 CTCCATGAAATCAAACGGATTCGTT--ACGTT-GTACACACGTCCAATGCCCAAATC-AA 60092 Query 16060 CAA-TAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTA 16118 ||| || || |||||| || ||||| || ||||| ||| || | |||||||| || | Sbjct 60091 CAAGTATTCCATCCGCAACGAATTCAATGTACTGGCACATCAACTTGCAGTTCATACCGA 60032 Query 16119 TTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGA 16178 | | | ||||| | | || | | ||| | || ||| || | || || || | | Sbjct 60031 TCAGTGACACAGGCAAAGAGTCAGAGACAAACTCTTCTTCAATTTCCACTGCCTCCTTCA 59972 Query 16179 TTATATCTCTTACTACACTATTTAACGGAGGGTTTAATAAGTGTTTAAA-CATTATACAA 16237 || ||| ||| | ||| | | | || || |||| ||| | | | Sbjct 59971 CAATCTCTAATACCTTT-TCTTTTGGGCATTGGCCGATGAGCGTTTTGTTCATAAGAACA 59913 Query 16238 GCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCT 16297 ||||| | | |||||| || ||||| | ||| |||||||| || ||||||||||| Sbjct 59912 GCAAATTGATAATGCAGGCCCTCGTCACGTGATATCAACTCGTTAGAGAATGTAAGACCG 59853 Query 16298 GGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATA 16357 ||||| || || |||||||| | ||| || |||| || || || ||| |||||| | Sbjct 59852 GGCATAAGACCGCGTTTTTTCAGCCAGAAGATAGATGCGAACGATCCACTAAAGAACAGC 59793 Query 16358 CCTTCAACTGCGGCAAATGCAA 16379 || ||||| ||||| |||| Sbjct 59792 CCCTCAACACACGCAAACGCAA 59771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462509808849400