Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vavraia_20culicis_20subsp._20floridensis_20[genbank_20GCA_5F00019279
5.1_202011-03-22] 379 sequences; 6,118,689 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq5 107 2e-18
>seq5
Length=183138
Score = 107 bits (118), Expect = 2e-18
Identities = 295/442 (67%), Gaps = 10/442 (2%)
Strand=Plus/Minus
Query 15943 TTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATT 16002
||| || || ||| ||| ||||| ||||||||||| || || || | ||||||||
Sbjct 60207 TTTCTGGTACTCAGCAACCCTCTTCTCAAAGAAATTCGTCTTCCCAAACAGCGAAATATT 60148
Query 16003 TTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTA--TCGCAT-CCCAATTCCAA 16059
||||| |||||||| ||||| || || | ||| | || || ||||| || ||
Sbjct 60147 CTCCATGAAATCAAACGGATTCGTT--ACGTT-GTACACACGTCCAATGCCCAAATC-AA 60092
Query 16060 CAA-TAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTA 16118
||| || || |||||| || ||||| || ||||| ||| || | |||||||| || |
Sbjct 60091 CAAGTATTCCATCCGCAACGAATTCAATGTACTGGCACATCAACTTGCAGTTCATACCGA 60032
Query 16119 TTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGA 16178
| | | ||||| | | || | | ||| | || ||| || | || || || | |
Sbjct 60031 TCAGTGACACAGGCAAAGAGTCAGAGACAAACTCTTCTTCAATTTCCACTGCCTCCTTCA 59972
Query 16179 TTATATCTCTTACTACACTATTTAACGGAGGGTTTAATAAGTGTTTAAA-CATTATACAA 16237
|| ||| ||| | ||| | | | || || |||| ||| | | |
Sbjct 59971 CAATCTCTAATACCTTT-TCTTTTGGGCATTGGCCGATGAGCGTTTTGTTCATAAGAACA 59913
Query 16238 GCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCT 16297
||||| | | |||||| || ||||| | ||| |||||||| || |||||||||||
Sbjct 59912 GCAAATTGATAATGCAGGCCCTCGTCACGTGATATCAACTCGTTAGAGAATGTAAGACCG 59853
Query 16298 GGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATA 16357
||||| || || |||||||| | ||| || |||| || || || ||| |||||| |
Sbjct 59852 GGCATAAGACCGCGTTTTTTCAGCCAGAAGATAGATGCGAACGATCCACTAAAGAACAGC 59793
Query 16358 CCTTCAACTGCGGCAAATGCAA 16379
|| ||||| ||||| ||||
Sbjct 59792 CCCTCAACACACGCAAACGCAA 59771
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462509808849400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |