Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vavraia_20culicis_20subsp._20floridensis_20[genbank_20GCA_5F00019279 5.1_202011-03-22] 379 sequences; 6,118,689 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq5 161 9e-35 seq16 125 6e-24 seq1 125 6e-24 seq57 89.7 5e-13 >seq5 Length=183138 Score = 161 bits (178), Expect = 9e-35 Identities = 539/830 (65%), Gaps = 18/830 (2%) Strand=Plus/Plus Query 57573 TGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCT 57632 ||| | ||||||||| ||||| | |||| || ||||| || |||||||| || || || Sbjct 59365 TGGCAGATGTACAAACAGGCATTATCATCATTCTGGACAGTGGAAGAAGTTGATCTATCA 59424 Query 57633 AAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTG 57692 |||||| | |||||| | | || | | |||| | ||||||| ||||| Sbjct 59425 AAGGATATTGATGATTGGAACCGGTTGAACGGAGATGAGCGCCATTTTATATCGTACGTG 59484 Query 57693 TTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCA 57752 | || || || || ||||| || ||||| || ||||||||| | | || | || || Sbjct 59485 CTCGCATTCTTTGCTGCATCGGACGGTATCGTGAACGAGAATCTCTTGGAGAACTTCTCG 59544 Query 57753 CAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAAC 57812 | || ||||| | | |||||| | ||||||||||| ||||| | || || ||| Sbjct 59545 CGCGAGGTGCAGCTCAAAGAGGCGCGCTGCTTTTACGGCTTTCAGATTATGATCGAGAAC 59604 Query 57813 GTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAA- 57871 ||||| |||||||| ||| | || |||||||||||| | ||||| | || ||||| Sbjct 59605 GTGCACAGTGAAATGTACTCGTTGCTGATCGATACGTACATTAAGGATCAGGAAGAGAAG 59664 Query 57872 -ACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGT 57930 || | || ||||| ||||| | | || || | | ||||| ||||||| Sbjct 59665 GACTT--TCTTTTCAATGCGATTGCCAACATCAATACGGTGAAGAGAAAGGCTGAGTGGT 59722 Query 57931 CAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGA-GGCTAATCGCGTTCGCC 57989 | |||||||| ||| | | | || | | | | | || ||||| || Sbjct 59723 GCTTTAAATGGAT-AAATGATAAAGATTCTGATTTTGCAACACGTGTTATTGCGTTTGCG 59781 Query 57990 GCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGC 58049 || || || | |||||| || || || | || || ||| |||| |||||| Sbjct 59782 TGTGTTGAGGGGCTGTTCTTTAGTGGATCGTTCGCATCTATCTTCTGGCTGAAAAAACGC 59841 Query 58050 GGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCAT 58109 || || |||||||| || || || |||||||||||||| || |||||||| || ||| Sbjct 59842 GGTCTTATGCCCGGTCTTACATTCTCTAACGAGTTGATATCACGTGACGAGGGCCTGCAT 59901 Query 58110 ACTGATTTTGCGTGCCTAATGTAC---TCTCACATTGTCAATAAACCGACGCGGGATCGC 58166 | | ||||| || ||| || | | ||| | | | | || | | | | Sbjct 59902 TATCAATTTGCTGTTCTTATGAACAAAACGCTCATCGGCCA-ATGCCCAAAAGAAAAGG- 59959 Query 58167 ATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTA 58226 | || || ||| | | ||||| || | || ||| | ||||||||| | || | | Sbjct 59960 -TATTAGAGATTGTGAAGGAGGCAGTGGAAATTGAAGAAGAGTTTGTCTCTGACTCTTTG 60018 Query 58227 CCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCC 58286 || ||| | || ||||||||||| | ||||||| |||||||||| || ||||| Sbjct 60019 CCTGTGTCACTGATCGGTATGAACTGCAAGTTGATGTGCCAGTACATTGAATTCGTTGCG 60078 Query 58287 GACAGACTTTTGCTCGAACTG---ATTGGAGAGCGTCATTACAACACGAAAAATCCGTTT 58343 || || | | | || || |||||| ||| |||||| | ||||||||| Sbjct 60079 GATGGAATACTTGTTGATTTGGGCATTGGA---CGTGTGTACAACGTAACGAATCCGTTT 60135 Query 58344 GATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGAAAA 58393 ||||| ||| | || ||||| || ||||| || || || || || Sbjct 60136 GATTTCATGGAGAATATTTCGCTGTTTGGGAAGACGAATTTCTTTGAGAA 60185 >seq16 Length=116485 Score = 125 bits (138), Expect = 6e-24 Identities = 566/876 (65%), Gaps = 39/876 (4%) Strand=Plus/Plus Query 22654 GTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTA 22713 || ||||||||| | |||| |||||| ||||| |||||| ||||| || | || || Sbjct 64647 GTTCCACATATCAAAATGCAGCACGCCCTGACTCATCGGGCTTCCTTCATAGCTGTCATA 64706 Query 22714 CGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTC 22773 ||| ||||| | ||||| || |||||||| || | || | ||| || || || Sbjct 64707 CGGCCCATACTCCTTCGCAAGCTCACAGCTCGCATCAAGTGCTGCAAAATGAATCGTTTC 64766 Query 22774 GAAGATTTTCTTGTTCAATTCGGCGGCG-GCGACGCTTTCG-----TACGGCATACGCAT 22827 || || | ||| | |||| ||| | | || | |||||||| | || Sbjct 64767 AAATAT------GCGCAAATTTACGGCACGCGCCTCCTTTGAATCATACGGCATCCTCAG 64820 Query 22828 CATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATT 22887 |||||| || | || || | ||||| || || | ||||| || || | ||| ||||| Sbjct 64821 CATCACAAAAACATCAGCAAGGCCCTGCACTCCAAGGCCGATGGGACGATGTTTGAGATT 64880 Query 22888 CGACACTT--TTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTT 22945 || || ||| |||||| | ||||||| |||| || || | |||| | ||| Sbjct 64881 --ACTGTTCCTTGTCTCGGGTAGAGGATACAAATTTACGTCTATCACTTTGTTGAGGTTC 64938 Query 22946 CTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAAC-GCCCGATTGTAC 23004 | ||||| || || | ||| |||| |||| | ||| | | | Sbjct 64939 TTTACGACAATCTTGGTGACCATTTTGAGCTTCTCATAGTC--AAACTGGCCGTCT-TGC 64995 Query 23005 AACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGT 23064 | || || | | | ||| || || | || || || || | |||| | || Sbjct 64996 ATGAACCTGGGCAA-GCCGAGGGATGCCAAGTTACACACCGCTATTTCGTTCTCCTCGGT 65054 Query 23065 GTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCT-CTGGT 23123 |||||| | ||||| | ||||| ||||| || || |||||||| || |||| ||| | Sbjct 65055 GTACTCCATTATTTCCGAGCATAGGTTGCTGCATTTGATCGTGCC-AAGGTGCTTCTGAT 65113 Query 23124 TGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTG-C 23182 || | | | ||| ||||| |||||| ||||||||||||||| ||||||| ||| | Sbjct 65114 TGTTCATCCTATTCGCTGAATCTTTGTAGCACATGTACGGCGTGCCAGTCTCGATCTGAC 65173 Query 23183 GACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACC-TGCC-TT 23240 ||| | || || ||||| |||| || | || ||| || || |||| || Sbjct 65174 TGCTC-AGAATAGCCTTCCACAACTTCTGTGCACGCACGGTCCGC-CGCGCCATGCCATT 65231 Query 23241 CTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAG-TCGGCCAGGC-C 23298 ||| |||||| | | |||| | |||||| || | ||||| ||| | | |||| | Sbjct 65232 CTTT-TCGTACATCTCGTACGCCTTGTCAAACTCATCTCCGTA-CAGATTGTACAGGTTC 65289 Query 23299 GGGCGATTGCATCG---GACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCAT 23355 ||| || ||||| || | | ||| || | || || | || | | ||| Sbjct 65290 GGGACAT--CATCGTTGGAGAACAGCGAC--CAGTTCTCATCGTTGTGCACCCTCCGCAT 65345 Query 23356 AAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCC 23415 || ||||| |||||||| || || ||| | ||||| || |||| ||||||||| || Sbjct 65346 GAACAGATCAGGTATCCACAGCGCTGTGAAAATATCGCGTGCACGCAGCTCCTCTTTACC 65405 Query 23416 GGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAAC 23475 |||||||| | ||| | || || || | || | ||||||||||||| ||| | Sbjct 65406 CGTGTTCTTGCGTATATCAAGGAACTCAAAGATATCGGAGTGCCACGGCTCGACGTAGAT 65465 Query 23476 GGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATC 23511 || | || ||||||| || |||||||| ||||| Sbjct 65466 CGCCATCGATCCCGGTCGTTTCTTGCCGCCTTGATC 65501 >seq1 Length=243087 Score = 125 bits (138), Expect = 6e-24 Identities = 566/876 (65%), Gaps = 39/876 (4%) Strand=Plus/Plus Query 22654 GTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTA 22713 || ||||||||| | |||| |||||| ||||| |||||| ||||| || | || || Sbjct 194117 GTTCCACATATCAAAATGCAGCACGCCCTGACTCATCGGGCTTCCTTCATAGCTGTCATA 194176 Query 22714 CGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTC 22773 ||| ||||| | ||||| || |||||||| || | || | ||| || || || Sbjct 194177 CGGCCCATACTCCTTCGCAAGCTCACAGCTCGCATCAAGTGCTGCAAAATGAATCGTTTC 194236 Query 22774 GAAGATTTTCTTGTTCAATTCGGCGGCG-GCGACGCTTTCG-----TACGGCATACGCAT 22827 || || | ||| | |||| ||| | | || | |||||||| | || Sbjct 194237 AAATAT------GCGCAAATTTACGGCACGCGCCTCCTTTGAATCATACGGCATCCTCAG 194290 Query 22828 CATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATT 22887 |||||| || | || || | ||||| || || | ||||| || || | ||| ||||| Sbjct 194291 CATCACAAAAACATCAGCAAGGCCCTGCACTCCAAGGCCGATGGGACGATGTTTGAGATT 194350 Query 22888 CGACACTT--TTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTT 22945 || || ||| |||||| | ||||||| |||| || || | |||| | ||| Sbjct 194351 --ACTGTTCCTTGTCTCGGGTAGAGGATACAAATTTACGTCTATCACTTTGTTGAGGTTC 194408 Query 22946 CTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAAC-GCCCGATTGTAC 23004 | ||||| || || | ||| |||| |||| | ||| | | | Sbjct 194409 TTTACGACAATCTTGGTGACCATTTTGAGCTTCTCATAGTC--AAACTGGCCGTCT-TGC 194465 Query 23005 AACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGT 23064 | || || | | | ||| || || | || || || || | |||| | || Sbjct 194466 ATGAACCTGGGCAA-GCCGAGGGATGCCAAGTTACACACCGCTATTTCGTTCTCCTCGGT 194524 Query 23065 GTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCT-CTGGT 23123 |||||| | ||||| | ||||| ||||| || || |||||||| || |||| ||| | Sbjct 194525 GTACTCCATTATTTCCGAGCATAGGTTGCTGCATTTGATCGTGCC-AAGGTGCTTCTGAT 194583 Query 23124 TGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTG-C 23182 || | | | ||| ||||| |||||| ||||||||||||||| ||||||| ||| | Sbjct 194584 TGTTCATCCTATTCGCTGAATCTTTGTAGCACATGTACGGCGTGCCAGTCTCGATCTGAC 194643 Query 23183 GACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACC-TGCC-TT 23240 ||| | || || ||||| |||| || | || ||| || || |||| || Sbjct 194644 TGCTC-AGAATAGCCTTCCACAACTTCTGTGCACGCACGGTCCGC-CGCGCCATGCCATT 194701 Query 23241 CTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAG-TCGGCCAGGC-C 23298 ||| |||||| | | |||| | |||||| || | ||||| ||| | | |||| | Sbjct 194702 CTTT-TCGTACATCTCGTACGCCTTGTCAAACTCATCTCCGTA-CAGATTGTACAGGTTC 194759 Query 23299 GGGCGATTGCATCG---GACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCAT 23355 ||| || ||||| || | | ||| || | || || | || | | ||| Sbjct 194760 GGGACAT--CATCGTTGGAGAACAGCGAC--CAGTTCTCATCGTTGTGCACCCTCCGCAT 194815 Query 23356 AAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCC 23415 || ||||| |||||||| || || ||| | ||||| || |||| ||||||||| || Sbjct 194816 GAACAGATCAGGTATCCACAGCGCTGTGAAAATATCGCGTGCACGCAGCTCCTCTTTACC 194875 Query 23416 GGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAAC 23475 |||||||| | ||| | || || || | || | ||||||||||||| ||| | Sbjct 194876 CGTGTTCTTGCGTATATCAAGGAACTCAAAGATATCGGAGTGCCACGGCTCGACGTAGAT 194935 Query 23476 GGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATC 23511 || | || ||||||| || |||||||| ||||| Sbjct 194936 CGCCATCGATCCCGGTCGTTTCTTGCCGCCTTGATC 194971 >seq57 Length=32437 Score = 89.7 bits (98), Expect = 5e-13 Identities = 161/232 (69%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| || || || || || || || | || || || || || Sbjct 26117 ATGCAAATATTCGTTAAGACACTCACGGGTAAGACCATTACGCTTGAGGTCGAGCCTTCA 26058 Query 31253 GACAGTGTCGAAACG----GTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 |||| ||| | | || ||| | | ||| ||||||||| ||| | || || || Sbjct 26057 GACA----CGATAAGTAATGTAAAAAATAAAATTAAGGACAAGGAGGGCATTCCTCCTGA 26002 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATT 31367 ||||||||| || || || || ||||| ||| | || || | | | | | |||| |||| Sbjct 26001 CCAGCAGCGGCTTATTTTTGCGGGCAAGCAGCTTGAGGA-TGGACGTAGTCTGAGTGATT 25943 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 | ||||| || || || || | ||||| || ||||| |||||||| || Sbjct 25942 ACAACATACAGAAGGAGAGTACGTTGCATCTTGTGCTTAGGCTGAGGGGAGG 25891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445764288181680