Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vavraia_20culicis_20subsp._20floridensis_20[genbank_20GCA_5F00019279 5.1_202011-03-22] 379 sequences; 6,118,689 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq5 138 2e-27 >seq5 Length=183138 Score = 138 bits (152), Expect = 2e-27 Identities = 300/443 (68%), Gaps = 11/443 (2%) Strand=Plus/Plus Query 101916 TTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCT 101975 || |||| ||||| ||||| || | ||||||||||| | |||||||| || |||| Sbjct 59768 TTATTGCGTTTGCGTGTGTTGAGGGGCTGTTCTTTAGTGGATCGTTCGCATCTATCTTCT 59827 Query 101976 GGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGG 102035 || | || || | ||| || |||| ||||| || | ||| || ||||| || || | | Sbjct 59828 GGCTGAAAAAACGCGGTCTTATGCCCGGTCTTACATTCTCTAACGAGTTGATATCACGTG 59887 Query 102036 ACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAA--AAAGGGTTTT--GTTGAT 102091 |||| || || ||| | ||||| || | || |||| ||| | | | | || Sbjct 59888 ACGAGGGCCTGCATTATCAATTTGC-TG--TTCTTATGAACAAAACGCTCATCGGCCAAT 59944 Query 102092 ACCCCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAA 102151 ||| | |||| || | ||| || ||||| | || || || ||||||| |||| Sbjct 59945 GCCCAA--AAGAAAAGGTATTA--GAGATTGTGAAGGAGGCAGTGGAAATTGAAGAAGAG 60000 Query 102152 TTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAG 102211 ||| || | | || ||||||| | | | || |||||||||||||||||| ||||| Sbjct 60001 TTTGTCTCTGACTCTTTGCCTGTGTCACTGATCGGTATGAACTGCAAGTTGATGTGCCAG 60060 Query 102212 TACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAAT 102271 ||||||||||| || || ||| | || | ||||| |||| | | | || || Sbjct 60061 TACATTGAATTCGTTGCGGATGGAATACTTGTTGATTTGGGCATTGGACGTGTGTACAAC 60120 Query 102272 GTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTT 102331 || || || || || |||||||| |||||||| || ||||| || || ||| Sbjct 60121 GTAACGAATCCGTTTGATTTCATGGAGAATATTTCGCTGTTTGGGAAGACGAATTTCTTT 60180 Query 102332 GAAAAGAGAGTCGCCGAGTATCA 102354 || ||||| || || ||||| || Sbjct 60181 GAGAAGAGGGTTGCTGAGTACCA 60203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989579194641945