Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vavraia_20culicis_20subsp._20floridensis_20[genbank_20GCA_5F00019279 5.1_202011-03-22] 379 sequences; 6,118,689 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq13 113 4e-20 seq57 86.0 6e-12 seq5 86.0 6e-12 >seq13 Length=120561 Score = 113 bits (124), Expect = 4e-20 Identities = 161/223 (72%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTC 139614 || ||||| | ||| ||| || || || ||||| ||||||| || | || | || || Sbjct 71757 ACCAAGTGCAGCGTGCTCTCCTTCTGTATATTATAGTCGCTCAGCGTCCGTCCA-TCCTC 71815 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 ||||| || || ||| | || || |||||||||||||| ||||| || || ||||| Sbjct 71816 AAGCTGCTTGCCCGCAAATATGAGTCGTTGCTGATCGGGTGGTATCCCCTCCTTGTCCTG 71875 Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 || || |||| | || | ||||||| | ||||||||||| || | ||||| Sbjct 71876 TATCTTCGCCTTTACATTCTCGATGGTGTCGGACGACTCCACCTCAAGTGTTATTGTCTT 71935 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCATAGCT-TATGTTTT 139776 ||| || | |||||||||||||| ||||| ||| | |||||| Sbjct 71936 GCCTGTGAGTGTTTTTACGAATATCTGCATCGCTCTTTGTTTT 71978 >seq57 Length=32437 Score = 86.0 bits (94), Expect = 6e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 139567 CGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTAC 139625 |||| ||| || || ||||| ||||| |||| | | || | || || ||||| || | Sbjct 25920 CGTACTCTCCTTCTGTATGTTGTAATCACTCAGACTACGTCCA-TCCTCAAGCTGCTTGC 25978 Query 139626 CAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTT 139685 | ||| | || || || ||||| || ||||| ||||| || ||||| | ||||| | || Sbjct 25979 CCGCAAAAATAAGCCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTTAATTTTATTTT 26038 Query 139686 TTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACG 139745 ||| | | ||||| | ||||| ||||||| || | ||||| || || | | Sbjct 26039 TTACATTACTTATCGTGTCTGAAGGCTCGACCTCAAGCGTAATGGTCTTACCCGTGAGTG 26098 Query 139746 TTTTTACGAATATTTGCAT 139764 | || |||||||||||||| Sbjct 26099 TCTTAACGAATATTTGCAT 26117 >seq5 Length=183138 Score = 86.0 bits (94), Expect = 6e-12 Identities = 163/237 (69%), Gaps = 5/237 (2%) Strand=Plus/Plus Query 52705 ATGCCCGGCCTCACGTTTAGCAACGAGTTGATATCGCGCGACGAAGGAATGCACACAGAT 52764 |||||||| || || || |||||||||||||| || ||||| || |||| | Sbjct 59848 ATGCCCGGTCTTACATTCTCTAACGAGTTGATATCACGTGACGAGGGCCTGCATTATCAA 59907 Query 52765 TTTGCGTGTTTGTAT-TATAATACGCGCGTTAAAGAAAAATTGTCATATGAAAAAATTCT 52823 ||||| |||| ||| | || |||| | | | ||| || | ||||| | | Sbjct 59908 TTTGC-TGTTCTTATGAACAAAACGC---TCATCGGCCAATGCCCAAAAGAAAAGGTATT 59963 Query 52824 AGACATGTTTAAAGAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGT 52883 ||| || | || ||||| || || |||||| |||||||| | | ||| |||| || || Sbjct 59964 AGAGATTGTGAAGGAGGCAGTGGAAATTGAAGAAGAGTTTGTCTCTGACTCTTTGCCTGT 60023 Query 52884 ATCATTGTTGGGCATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGA 52940 ||| || | || |||||| | |||||||| ||||||| || || |||||||| Sbjct 60024 GTCACTGATCGGTATGAACTGCAAGTTGATGTGCCAGTACATTGAATTCGTTGCGGA 60080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496061649896800