Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vavraia_20culicis_20subsp._20floridensis_20[genbank_20GCA_5F00019279
5.1_202011-03-22] 379 sequences; 6,118,689 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq13 113 4e-20
seq57 86.0 6e-12
seq5 86.0 6e-12
>seq13
Length=120561
Score = 113 bits (124), Expect = 4e-20
Identities = 161/223 (72%), Gaps = 3/223 (1%)
Strand=Plus/Plus
Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTC 139614
|| ||||| | ||| ||| || || || ||||| ||||||| || | || | || ||
Sbjct 71757 ACCAAGTGCAGCGTGCTCTCCTTCTGTATATTATAGTCGCTCAGCGTCCGTCCA-TCCTC 71815
Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674
||||| || || ||| | || || |||||||||||||| ||||| || || |||||
Sbjct 71816 AAGCTGCTTGCCCGCAAATATGAGTCGTTGCTGATCGGGTGGTATCCCCTCCTTGTCCTG 71875
Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734
|| || |||| | || | ||||||| | ||||||||||| || | |||||
Sbjct 71876 TATCTTCGCCTTTACATTCTCGATGGTGTCGGACGACTCCACCTCAAGTGTTATTGTCTT 71935
Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCATAGCT-TATGTTTT 139776
||| || | |||||||||||||| ||||| ||| | ||||||
Sbjct 71936 GCCTGTGAGTGTTTTTACGAATATCTGCATCGCTCTTTGTTTT 71978
>seq57
Length=32437
Score = 86.0 bits (94), Expect = 6e-12
Identities = 140/199 (70%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 139567 CGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTAC 139625
|||| ||| || || ||||| ||||| |||| | | || | || || ||||| || |
Sbjct 25920 CGTACTCTCCTTCTGTATGTTGTAATCACTCAGACTACGTCCA-TCCTCAAGCTGCTTGC 25978
Query 139626 CAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTT 139685
| ||| | || || || ||||| || ||||| ||||| || ||||| | ||||| | ||
Sbjct 25979 CCGCAAAAATAAGCCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTTAATTTTATTTT 26038
Query 139686 TTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACG 139745
||| | | ||||| | ||||| ||||||| || | ||||| || || | |
Sbjct 26039 TTACATTACTTATCGTGTCTGAAGGCTCGACCTCAAGCGTAATGGTCTTACCCGTGAGTG 26098
Query 139746 TTTTTACGAATATTTGCAT 139764
| || ||||||||||||||
Sbjct 26099 TCTTAACGAATATTTGCAT 26117
>seq5
Length=183138
Score = 86.0 bits (94), Expect = 6e-12
Identities = 163/237 (69%), Gaps = 5/237 (2%)
Strand=Plus/Plus
Query 52705 ATGCCCGGCCTCACGTTTAGCAACGAGTTGATATCGCGCGACGAAGGAATGCACACAGAT 52764
|||||||| || || || |||||||||||||| || ||||| || |||| |
Sbjct 59848 ATGCCCGGTCTTACATTCTCTAACGAGTTGATATCACGTGACGAGGGCCTGCATTATCAA 59907
Query 52765 TTTGCGTGTTTGTAT-TATAATACGCGCGTTAAAGAAAAATTGTCATATGAAAAAATTCT 52823
||||| |||| ||| | || |||| | | | ||| || | ||||| | |
Sbjct 59908 TTTGC-TGTTCTTATGAACAAAACGC---TCATCGGCCAATGCCCAAAAGAAAAGGTATT 59963
Query 52824 AGACATGTTTAAAGAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGT 52883
||| || | || ||||| || || |||||| |||||||| | | ||| |||| || ||
Sbjct 59964 AGAGATTGTGAAGGAGGCAGTGGAAATTGAAGAAGAGTTTGTCTCTGACTCTTTGCCTGT 60023
Query 52884 ATCATTGTTGGGCATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGA 52940
||| || | || |||||| | |||||||| ||||||| || || ||||||||
Sbjct 60024 GTCACTGATCGGTATGAACTGCAAGTTGATGTGCCAGTACATTGAATTCGTTGCGGA 60080
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496061649896800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |