Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vavraia_20culicis_20subsp._20floridensis_20[genbank_20GCA_5F00019279 5.1_202011-03-22] 379 sequences; 6,118,689 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq16 87.8 3e-12 seq1 87.8 3e-12 >seq16 Length=116485 Score = 87.8 bits (96), Expect = 3e-12 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 79947 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTT 80006 ||| || |||||||| ||||| || ||| | || | ||| | | | ||||||| || Sbjct 65343 CATGAACAGATCAGGTATCCACAGCGCTGTGAAAATATCGCGTGCACGCAGCTCCTCTTT 65402 Query 80007 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 80066 || || ||||| | ||| |||||| | | ||||| || |||||||| || | ||| Sbjct 65403 ACCCGTGTTCTTGCGTATATCAAGGAACTCAAAGATATCGGAGTGCCACGGCTCGACGTA 65462 Query 80067 TATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATG 80109 || ||||| |||||||||||| || || || ||||| ||| Sbjct 65463 GATCGCCATCGATCCCGGTCGTTTCTTGCCGCCTTGATCAATG 65505 >seq1 Length=243087 Score = 87.8 bits (96), Expect = 3e-12 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 79947 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTT 80006 ||| || |||||||| ||||| || ||| | || | ||| | | | ||||||| || Sbjct 194813 CATGAACAGATCAGGTATCCACAGCGCTGTGAAAATATCGCGTGCACGCAGCTCCTCTTT 194872 Query 80007 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 80066 || || ||||| | ||| |||||| | | ||||| || |||||||| || | ||| Sbjct 194873 ACCCGTGTTCTTGCGTATATCAAGGAACTCAAAGATATCGGAGTGCCACGGCTCGACGTA 194932 Query 80067 TATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATG 80109 || ||||| |||||||||||| || || || ||||| ||| Sbjct 194933 GATCGCCATCGATCCCGGTCGTTTCTTGCCGCCTTGATCAATG 194975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718265397201560