Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vavraia_20culicis_20subsp._20floridensis_20[genbank_20GCA_5F00019279 5.1_202011-03-22] 379 sequences; 6,118,689 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq57 91.5 1e-13 seq13 89.7 5e-13 >seq57 Length=32437 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 142994 TCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATA 143052 || || |||||||||||||| |||| | | || | || || || || || || ||| | Sbjct 25927 TCCTTCTGTATGTTGTAATCACTCAGACTACGTCCA-TCCTCAAGCTGCTTGCCCGCAAA 25985 Query 143053 GATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTG 143112 || || || ||||| || ||||| ||||| || ||||| ||||||| | ||||| | Sbjct 25986 AATAAGCCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTTAATTTTATTTTTTACATT 26045 Query 143113 TTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTAC 143172 | |||||| | || || || |||| || | ||||| || || | ||| || || Sbjct 26046 ACTTATCGTGTCTGAAGGCTCGACCTCAAGCGTAATGGTCTTACCCGTGAGTGTCTTAAC 26105 Query 143173 GAATATTTGCAT 143184 |||||||||||| Sbjct 26106 GAATATTTGCAT 26117 >seq13 Length=120561 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/205 (71%), Gaps = 3/205 (1%) Strand=Plus/Plus Query 142994 TCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATA 143052 || || ||||| || || ||||||| || | || | || || || || || || ||| | Sbjct 71775 TCCTTCTGTATATTATAGTCGCTCAGCGTCCGTCCA-TCCTCAAGCTGCTTGCCCGCAAA 71833 Query 143053 GATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTG 143112 || || |||||||||||||| ||||| || || ||||| || || |||| | Sbjct 71834 TATGAGTCGTTGCTGATCGGGTGGTATCCCCTCCTTGTCCTGTATCTTCGCCTTTACATT 71893 Query 143113 TTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTAC 143172 || | ||||| | | || || |||| || | |||||||| || | ||||||||| Sbjct 71894 CTCGATGGTGTCGGACGACTCCACCTCAAGTGTTATTGTCTTGCCTGTGAGTGTTTTTAC 71953 Query 143173 GAATATTTGCATAGCT-TATGTTTT 143196 |||||| ||||| ||| | |||||| Sbjct 71954 GAATATCTGCATCGCTCTTTGTTTT 71978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507011998019280