Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vavraia_20culicis_20subsp._20floridensis_20[genbank_20GCA_5F00019279 5.1_202011-03-22] 379 sequences; 6,118,689 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq5 181 2e-40 >seq5 Length=183138 Score = 181 bits (200), Expect = 2e-40 Identities = 554/848 (65%), Gaps = 30/848 (4%) Strand=Plus/Plus Query 125022 TGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCC 125081 ||| | ||||||||| |||| | || || ||||| || ||||| || ||||| || Sbjct 59365 TGGCAGATGTACAAACAGGCATTATCATCATTCTGGACAGTGGAAGAAGTTGATCTATCA 59424 Query 125082 AAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCAC 125141 ||||| | | |||||| | || |||| | | |||||| | ||||||||| || Sbjct 59425 AAGGATATTGATGATTGGAAC---CGGTTGAACGGAGATGAGCGCCATTTTATATCGTAC 59481 Query 125142 ATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTC 125201 | | || |||||||| | || || || ||||| ||||| ||||| ||| ||| Sbjct 59482 GTGCTCGCATTCTTTGCTGCATCGGACGGTATCGTGAACGAGAATCTCTTGGAGAACTTC 59541 Query 125202 TCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAG 125261 || | ||| || | ||||| | ||||||||||| || || || ||||| ||| Sbjct 59542 TCGCGCGAGGTGCAGCTCAAAGAGGCGCGCTGCTTTTACGGCTTTCAGATTATGATCGAG 59601 Query 125262 AACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAACGT 125321 ||||||||| ||||||||||| ||||| || | ||||||| |||| | || Sbjct 59602 AACGTGCACAGTGAAATGTACTCGTTGCTGATCGATACGTACATTAAGGATCAGGAAGAG 59661 Query 125322 AAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACG-----TAAAAAGGCTC 125376 || || | || || || || || | || | || ||||| | ||||||| Sbjct 59662 AAGGACTTTCTTTTCAATGCGATTGCCA-----ACATCAATACGGTGAAGAGAAAGGCTG 59716 Query 125377 AATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACA-GACTGGTGGCA 125435 | ||| || ||||| |||| | | ||| | | | ||| | | | || Sbjct 59717 AGTGGTGCTTTAAATGGATAAATGATAAAGATTCTGATTTTG-CAACACGTGTTATTGCG 59775 Query 125436 TTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAG 125495 || || || ||||| | |||||| || || || | ||||| ||||| || Sbjct 59776 TTTGCGTGTGTTGAGGGGCTGTTCTTTAGTGGATCGTTCGCATCTATCTTCTGGCTGAAA 59835 Query 125496 AAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGC 125555 || ||||| || |||||||| || || | ||||||||| ||||| || ||||||||| Sbjct 59836 AAACGCGGTCTTATGCCCGGTCTTACATTCTCTAACGAGTTGATATCACGTGACGAGGGC 59895 Query 125556 CTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCC 125615 || || | | | ||||| |||| || | ||| || || || | ||| || Sbjct 59896 CTGCATTATCAATTTGCTGTTCTTATG-AACAAAACGCTCATCGGCC--AATGC----CC 59948 Query 125616 AGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTA 125675 | | |||||||| | | ||||| | || || ||| || ||| |||||||| | Sbjct 59949 A--AAAGAAAAGGTATTAGAGATTGTGAAGGAGGCAGTGGAAATTGAAGAAGAGTTTGTC 60006 Query 125676 ACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATA 125735 | || || | || || |||| || |||||||||||| | |||||| ||||||| Sbjct 60007 TCTGACTCTTTGCCTGTGTCACTGATCGGTATGAACTGCAAGTTGATGTGCCAGTACATT 60066 Query 125736 GAGTTTGTGGCAGATCGTCTACTGTACGAGTTG---ATTGGCCGCAAGATTTACAACGCC 125792 || || || || ||| | |||| || ||| ||||| || | ||||||| Sbjct 60067 GAATTCGTTGCGGATGGAATACTTGTTGATTTGGGCATTGGACG---TGTGTACAACGTA 60123 Query 125793 AAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAG 125852 | |||||| |||||||||||| | || || || || ||||| || || || ||| Sbjct 60124 ACGAATCCGTTTGATTTCATGGAGAATATTTCGCTGTTTGGGAAGACGAATTTCTTTGAG 60183 Query 125853 AAGAAGGT 125860 |||| ||| Sbjct 60184 AAGAGGGT 60191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741055689232040