Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vavraia_20culicis_20subsp._20floridensis_20[genbank_20GCA_5F00019279
5.1_202011-03-22] 379 sequences; 6,118,689 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq13 123 6e-23
seq5 107 4e-18
>seq13
Length=120561
Score = 123 bits (136), Expect = 6e-23
Identities = 142/191 (74%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428
|| ||||| ||||||||||| || || | || || || || || || || |||||
Sbjct 71775 TCCTTCTGTATATTATAGTCGCTCAGCGTCCGTCCATCCTCAAGCTGCTTGCCCGCAAAT 71834
Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488
|| || | || ||||| || ||||| || || || ||||| ||||| || ||||||||
Sbjct 71835 ATGAGTCGTTGCTGATCGGGTGGTATCCCCTCCTTGTCCTGTATCTTCGCCTTTACATTC 71894
Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548
|| | ||| ||| | || ||||| ||||| || ||||| || || |||||||||||
Sbjct 71895 TCGATGGTGTCGGACGACTCCACCTCAAGTGTTATTGTCTTGCCTGTGAGTGTTTTTACG 71954
Query 104549 AATATCTGCAT 104559
|||||||||||
Sbjct 71955 AATATCTGCAT 71965
>seq5
Length=183138
Score = 107 bits (118), Expect = 4e-18
Identities = 348/530 (66%), Gaps = 19/530 (4%)
Strand=Plus/Plus
Query 268730 GATATATGGAGGATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGAT 268789
||| ||||| ||||||||||||||| | | || || ||||| || |||||||| |||
Sbjct 59359 GATGTATGGCAGATGTACAAACAGGCATTATCATCATTCTGGACAGTGGAAGAAGTTGAT 59418
Query 268790 CTGTCTTATGA-CTTAATAGATTGGAAAAATTTAAAACCAGAAGAAAGAAGATTTATATC 268848
|| || | || || || |||||||| || || ||| || | ||||||||
Sbjct 59419 CTATCAAAGGATATTGAT-GATTGGAACCGGTTGAACGGAGATGAGCGCCATTTTATATC 59477
Query 268849 TTATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAA 268908
|| | || || || ||||| | || |||||||| ||||| ||||| | |||||
Sbjct 59478 GTACGTGCTCGCATTCTTTGCTGCATCGGACGGTATCGTGAACGAGAATCTCTTGGAGAA 59537
Query 268909 GTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTAT 268968
|||| | ||||| ||| | || || | || |||||||| || ||||| ||
Sbjct 59538 CTTCTCGCGCGAGGTGCAGCTCAAAGAGGCGCGCTGCTTTTACGGCTTTCAGATTATGAT 59597
Query 268969 AGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAA 269028
|| || | || || |||||| | | || ||||| || || | ||| |
Sbjct 59598 CGAGAACGTGCACAGTGAAATGTACTCGTTGCTGATCGATACGTACATTAAGGAT---CA 59654
Query 269029 CGAAAAGAAAAGACTATTTTCTTCTATGAGA-----ACTATGGACTGTGTGAGaaaaaaa 269083
||| || || |||| || | ||| ||| || | || | |||| | |||
Sbjct 59655 GGAAGAG-AAGGACT-TTCTTTTCAATGCGATTGCCAACATCAATACGGTGAAGAGAAAG 59712
Query 269084 TCTGAATGG-GCTCTGAAATGGATAAACGATAGCGCGCCTTACGGAGAAA----GGTTAG 269138
|||| ||| ||| | ||||||||||| |||| | || | | || ||||
Sbjct 59713 GCTGAGTGGTGCT-TTAAATGGATAAATGATAAAGATTCTGATTTTGCAACACGTGTTA- 59770
Query 269139 TTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGT 269198
|||| ||||| ||| || || | |||||| || || || || ||||||| |||
Sbjct 59771 TTGCGTTTGCGTGTGTTGAGGGGCTGTTCTTTAGTGGATCGTTCGCATCTATCTTCTGGC 59830
Query 269199 TGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATA 269248
|||| ||| | || |||||||| || | || ||||||||||| ||||||
Sbjct 59831 TGAAAAAACGCGGTCTTATGCCCGGTCTTACATTCTCTAACGAGTTGATA 59880
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151392808881332
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |