Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vavraia_20culicis_20subsp._20floridensis_20[genbank_20GCA_5F00019279 5.1_202011-03-22] 379 sequences; 6,118,689 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq13 123 6e-23 seq5 107 4e-18 >seq13 Length=120561 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || ||||| ||||||||||| || || | || || || || || || || ||||| Sbjct 71775 TCCTTCTGTATATTATAGTCGCTCAGCGTCCGTCCATCCTCAAGCTGCTTGCCCGCAAAT 71834 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || | || ||||| || ||||| || || || ||||| ||||| || |||||||| Sbjct 71835 ATGAGTCGTTGCTGATCGGGTGGTATCCCCTCCTTGTCCTGTATCTTCGCCTTTACATTC 71894 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | ||| ||| | || ||||| ||||| || ||||| || || ||||||||||| Sbjct 71895 TCGATGGTGTCGGACGACTCCACCTCAAGTGTTATTGTCTTGCCTGTGAGTGTTTTTACG 71954 Query 104549 AATATCTGCAT 104559 ||||||||||| Sbjct 71955 AATATCTGCAT 71965 >seq5 Length=183138 Score = 107 bits (118), Expect = 4e-18 Identities = 348/530 (66%), Gaps = 19/530 (4%) Strand=Plus/Plus Query 268730 GATATATGGAGGATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGAT 268789 ||| ||||| ||||||||||||||| | | || || ||||| || |||||||| ||| Sbjct 59359 GATGTATGGCAGATGTACAAACAGGCATTATCATCATTCTGGACAGTGGAAGAAGTTGAT 59418 Query 268790 CTGTCTTATGA-CTTAATAGATTGGAAAAATTTAAAACCAGAAGAAAGAAGATTTATATC 268848 || || | || || || |||||||| || || ||| || | |||||||| Sbjct 59419 CTATCAAAGGATATTGAT-GATTGGAACCGGTTGAACGGAGATGAGCGCCATTTTATATC 59477 Query 268849 TTATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAA 268908 || | || || || ||||| | || |||||||| ||||| ||||| | ||||| Sbjct 59478 GTACGTGCTCGCATTCTTTGCTGCATCGGACGGTATCGTGAACGAGAATCTCTTGGAGAA 59537 Query 268909 GTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTAT 268968 |||| | ||||| ||| | || || | || |||||||| || ||||| || Sbjct 59538 CTTCTCGCGCGAGGTGCAGCTCAAAGAGGCGCGCTGCTTTTACGGCTTTCAGATTATGAT 59597 Query 268969 AGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAA 269028 || || | || || |||||| | | || ||||| || || | ||| | Sbjct 59598 CGAGAACGTGCACAGTGAAATGTACTCGTTGCTGATCGATACGTACATTAAGGAT---CA 59654 Query 269029 CGAAAAGAAAAGACTATTTTCTTCTATGAGA-----ACTATGGACTGTGTGAGaaaaaaa 269083 ||| || || |||| || | ||| ||| || | || | |||| | ||| Sbjct 59655 GGAAGAG-AAGGACT-TTCTTTTCAATGCGATTGCCAACATCAATACGGTGAAGAGAAAG 59712 Query 269084 TCTGAATGG-GCTCTGAAATGGATAAACGATAGCGCGCCTTACGGAGAAA----GGTTAG 269138 |||| ||| ||| | ||||||||||| |||| | || | | || |||| Sbjct 59713 GCTGAGTGGTGCT-TTAAATGGATAAATGATAAAGATTCTGATTTTGCAACACGTGTTA- 59770 Query 269139 TTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGT 269198 |||| ||||| ||| || || | |||||| || || || || ||||||| ||| Sbjct 59771 TTGCGTTTGCGTGTGTTGAGGGGCTGTTCTTTAGTGGATCGTTCGCATCTATCTTCTGGC 59830 Query 269199 TGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATA 269248 |||| ||| | || |||||||| || | || ||||||||||| |||||| Sbjct 59831 TGAAAAAACGCGGTCTTATGCCCGGTCTTACATTCTCTAACGAGTTGATA 59880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151392808881332