Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vavraia_20culicis_20subsp._20floridensis_20[genbank_20GCA_5F00019279
5.1_202011-03-22] 379 sequences; 6,118,689 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq57 120 3e-22
seq13 100 2e-16
>seq57
Length=32437
Score = 120 bits (132), Expect = 3e-22
Identities = 166/230 (72%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
|||||||||||| || ||||| | || ||||| |||| || | || || ||| | ||
Sbjct 26118 AATGCAAATATTCGTTAAGACACTCACGGGTAAGACCATTACGCTTGAGGTCGAGCCTTC 26059
Query 25058 TGACACTATCGAGTCA-CTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
||||| || ||| | | || | ||||| | ||||| || || ||||| |||||||
Sbjct 26058 AGACACGAT-AAGTAATGTAAAAAATAAAATTAAGGACAAGGAGGGCATTCCTCCTGACC 26000
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
| |||||| |||||||||| ||||| || | || |||| || | | || | |||||||
Sbjct 25999 AGCAGCGGCTTATTTTTGCGGGCAAGCAGCTTGAGGATGGACGTAGTCTGAGTGATTACA 25940
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226
| || || || || ||| | ||| | ||||| ||||| || ||||||
Sbjct 25939 ACATACAGAAGGAGAGTACGTTGCATCTTGTGCTTAGGCTGAGGGGAGGA 25890
>seq13
Length=120561
Score = 100 bits (110), Expect = 2e-16
Identities = 153/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| ||||| ||||| || | || || || | || ||| | || |||||||||||
Sbjct 71965 ATGCAGATATTCGTAAAAACACTCACAGGCAAGACAATAACACTTGAGGTGGAGTCGTCC 71906
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| |||||| | ||| || || ||||| || ||||| ||||| || ||
Sbjct 71905 GACACCATCGAGAATGTAAAGGCGAAGATACAGGACAAGGAGGGGATACCACCCGATCAG 71846
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
|| || | || ||||| ||||| || | || |||| || || || |||| || |||
Sbjct 71845 CAACGACTCATATTTGCGGGCAAGCAGCTTGAGGATGGACGGACGCTGAGCGACTATAAT 71786
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216
|| || || || |||||| || || ||||| |||||
Sbjct 71785 ATACAGAAGGAGAGCACGCTGCACTTGGTGCTCAGGCT 71748
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433325998430885
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |