Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vavraia_20culicis_20subsp._20floridensis_20[genbank_20GCA_5F00019279
5.1_202011-03-22] 379 sequences; 6,118,689 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq5 183 3e-41
>seq5
Length=183138
Score = 183 bits (202), Expect = 3e-41
Identities = 494/743 (66%), Gaps = 27/743 (4%)
Strand=Plus/Minus
Query 92916 ACAA-TAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCT 92974
|||| || || ||| || || ||||| |||||||| ||||||| | || ||||| ||
Sbjct 60092 ACAAGTATTCCATCCGCAACGAATTCAATGTACTGGCACATCAACTTGCAGTTCATACCG 60033
Query 92975 AGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTC 93034
| || ||||| | || ||| | | || |||| || ||| | || || || |||
Sbjct 60032 ATCAGTGACACAGGCAAAGAGTCAGAGACAAACTCTTCTTCAATTTCCACTGCCTCCTTC 59973
Query 93035 AAGATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGA----CATAATTGTACATTAA 93090
| || |||| ||| || | ||| ||| ||| ||| | | |||| ||| ||
Sbjct 59972 ACAATCTCTAATAC-CTTTTCTTT--TGGGCATTGGCCGATGAGCGTT-TTGTTCAT-AA 59918
Query 93091 GCAC-GCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTA 93149
| || ||||| | ||| | || ||||| |||||||||||||| || |||||| |
Sbjct 59917 GAACAGCAAATTGATAATGCAGGCCCTCGTCACGTGATATCAACTCGTTAGAGAATGTAA 59858
Query 93150 AACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaa 93209
||| || | || || ||||| || ||||| || || || || || ||| ||| |
Sbjct 59857 GACCGGGCATAAGACCGCGTTTTTTCAGCCAGAAGATAGATGCGAACGATCCACTAAAGA 59798
Query 93210 aTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAA---TTAC 93266
| | || || || ||||| || | || |||| ||||||| | ||| |||
Sbjct 59797 ACAGCCCCTCAACACACGCAAACGCAATAACACGTGTTGCAAAAT---CAGAATCTTTAT 59741
Query 93267 TGCTGATCCATTTTAAAGC-CCAATCGGCTTTTTTCTTAATACAAGGTAGTG----TTTC 93321
| ||||| |||||||| ||| || || ||| |||| || ||| || | |
Sbjct 59740 CATTTATCCA-TTTAAAGCACCACTCAGCCTTTCTCTT----CACCGTATTGATGTTGGC 59686
Query 93322 GATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAG 93381
|| || || || || | || ||| ||| ||| ||||| |||||||| | ||
Sbjct 59685 AATCGCATTGAAAAGAAAGTCCTTCTCTTCCTGATCCTTAATGTACGTATCGATCAGCAA 59626
Query 93382 AGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGC 93441
|| ||||||||| || || ||||| || ||| || || ||||| || || | ||
Sbjct 59625 CGAGTACATTTCACTGTGCACGTTCTCGATCATAATCTGAAAGCCGTAAAAGCAGCGCGC 59566
Query 93442 TTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATC 93501
|| ||| |||||| || | || || |||| | |||||| || || || ||||| ||
Sbjct 59565 CTCTTTGAGCTGCACCTCGCGCGAGAAGTTCTCCAAGAGATTCTCGTTCACGATACCGTC 59506
Query 93502 GGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTT 93561
||||| ||||| || || | | | | ||||||||| |||||| | || | |
Sbjct 59505 CGATGCAGCAAAGAATGCGAGCACGTACGATATAAAATGGCGCTCATCTCCGTTCAACCG 59446
Query 93562 ATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTC 93621
| |||||| | ||| ||||| ||||| |||||||| || ||||| || |||| |
Sbjct 59445 GTTCCAATCATCAATATCCTTTGATAGATCAACTTCTTCCACTGTCCAGAATGATGATAA 59386
Query 93622 TGCTTTTTTGTACATATCCCATA 93644
||| | ||||||||| | |||||
Sbjct 59385 TGCCTGTTTGTACATCTGCCATA 59363
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556858161871960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |