Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vavraia_20culicis_20subsp._20floridensis_20[genbank_20GCA_5F00019279 5.1_202011-03-22] 379 sequences; 6,118,689 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq5 183 3e-41 >seq5 Length=183138 Score = 183 bits (202), Expect = 3e-41 Identities = 494/743 (66%), Gaps = 27/743 (4%) Strand=Plus/Minus Query 92916 ACAA-TAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCT 92974 |||| || || ||| || || ||||| |||||||| ||||||| | || ||||| || Sbjct 60092 ACAAGTATTCCATCCGCAACGAATTCAATGTACTGGCACATCAACTTGCAGTTCATACCG 60033 Query 92975 AGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTC 93034 | || ||||| | || ||| | | || |||| || ||| | || || || ||| Sbjct 60032 ATCAGTGACACAGGCAAAGAGTCAGAGACAAACTCTTCTTCAATTTCCACTGCCTCCTTC 59973 Query 93035 AAGATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGA----CATAATTGTACATTAA 93090 | || |||| ||| || | ||| ||| ||| ||| | | |||| ||| || Sbjct 59972 ACAATCTCTAATAC-CTTTTCTTT--TGGGCATTGGCCGATGAGCGTT-TTGTTCAT-AA 59918 Query 93091 GCAC-GCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTA 93149 | || ||||| | ||| | || ||||| |||||||||||||| || |||||| | Sbjct 59917 GAACAGCAAATTGATAATGCAGGCCCTCGTCACGTGATATCAACTCGTTAGAGAATGTAA 59858 Query 93150 AACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaa 93209 ||| || | || || ||||| || ||||| || || || || || ||| ||| | Sbjct 59857 GACCGGGCATAAGACCGCGTTTTTTCAGCCAGAAGATAGATGCGAACGATCCACTAAAGA 59798 Query 93210 aTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAA---TTAC 93266 | | || || || ||||| || | || |||| ||||||| | ||| ||| Sbjct 59797 ACAGCCCCTCAACACACGCAAACGCAATAACACGTGTTGCAAAAT---CAGAATCTTTAT 59741 Query 93267 TGCTGATCCATTTTAAAGC-CCAATCGGCTTTTTTCTTAATACAAGGTAGTG----TTTC 93321 | ||||| |||||||| ||| || || ||| |||| || ||| || | | Sbjct 59740 CATTTATCCA-TTTAAAGCACCACTCAGCCTTTCTCTT----CACCGTATTGATGTTGGC 59686 Query 93322 GATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAG 93381 || || || || || | || ||| ||| ||| ||||| |||||||| | || Sbjct 59685 AATCGCATTGAAAAGAAAGTCCTTCTCTTCCTGATCCTTAATGTACGTATCGATCAGCAA 59626 Query 93382 AGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGC 93441 || ||||||||| || || ||||| || ||| || || ||||| || || | || Sbjct 59625 CGAGTACATTTCACTGTGCACGTTCTCGATCATAATCTGAAAGCCGTAAAAGCAGCGCGC 59566 Query 93442 TTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATC 93501 || ||| |||||| || | || || |||| | |||||| || || || ||||| || Sbjct 59565 CTCTTTGAGCTGCACCTCGCGCGAGAAGTTCTCCAAGAGATTCTCGTTCACGATACCGTC 59506 Query 93502 GGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTT 93561 ||||| ||||| || || | | | | ||||||||| |||||| | || | | Sbjct 59505 CGATGCAGCAAAGAATGCGAGCACGTACGATATAAAATGGCGCTCATCTCCGTTCAACCG 59446 Query 93562 ATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTC 93621 | |||||| | ||| ||||| ||||| |||||||| || ||||| || |||| | Sbjct 59445 GTTCCAATCATCAATATCCTTTGATAGATCAACTTCTTCCACTGTCCAGAATGATGATAA 59386 Query 93622 TGCTTTTTTGTACATATCCCATA 93644 ||| | ||||||||| | ||||| Sbjct 59385 TGCCTGTTTGTACATCTGCCATA 59363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556858161871960