Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vavraia_20culicis_20subsp._20floridensis_20[genbank_20GCA_5F00019279 5.1_202011-03-22] 379 sequences; 6,118,689 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq13 107 5e-18 seq10 104 6e-17 >seq13 Length=120561 Score = 107 bits (118), Expect = 5e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || || || || | || | |||||| || || || |||||||||||| Sbjct 71739 CCACCCCGCAGCCTGAGCACCAAGTGCAGCGTGCTCTCCTTCTGTATATTATAGTCGCTC 71798 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 ||||| ||||| || || | || || || || || || || || || ||| ||| Sbjct 71799 AGCGTCCGTCCATCCTCAAGCTGCTTGCCCGCAAATATGAGTCGTTGCTGATCGGGTGGT 71858 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || ||||| || ||||| || || || || || | ||| ||| || || Sbjct 71859 ATCCCCTCCTTGTCCTGTATCTTCGCCTTTACATTCTCGATGGTGTCGGACGACTCCACC 71918 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||| || || || || || |||||||||||||| Sbjct 71919 TCAAGTGTTATTGTCTTGCCTGTGAGTGTTTTTACGAATATCTGCAT 71965 >seq10 Length=142875 Score = 104 bits (114), Expect = 6e-17 Identities = 331/508 (65%), Gaps = 4/508 (1%) Strand=Plus/Minus Query 325145 GGAATGTTCGTCGACCATCCGGTTCCGATACCACTCGATCCATTCACCAGGATACTCGGA 325204 || || || ||| |||| || || || |||||| | || ||||| || | | || Sbjct 35241 GGTATCTTGGTCAACCACCCCGTACCAATACCATCAGCACCGTTCACAAGCACCATTGGC 35182 Query 325205 ATAACAGGCACATAATACTCTGGTTCGATCTTATCGCCGTCGTCGTACATATATTTCAGA 325264 | | ||| || ||| | | ||||| || || | || || ||||| |||||| Sbjct 35181 ACGATAGGAACGTAAAATGCAGGTTCTATTTTCAGGTTATCCTCTATGATATAATTCAGA 35122 Query 325265 AGATTGTCGTCCGTATCGACGAAAACCTGTCGAGTCTGAGGGTTCAGTTTCatatatata 325324 ||| || || | || ||||| | || ||| || | ||| || || | || Sbjct 35121 AGAGCATCATCGCTCTCTACGAATATCTTTCGGGTAATATTCGCCAGATTTGTAAAAATG 35062 Query 325325 tatCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGC 325384 || ||||| || ||| || ||||| |||| | || ||||| || || | || Sbjct 35061 TAACGTGCGGAAGCCGCATCTTTGCCACCTTGCAGGCGCGTGCCGAATTGACCGGCTGGT 35002 Query 325385 AACAACCAG-TTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCC 325443 ||| ||| |||| || ||||| || ||| |||| |||||||| || | || ||| Sbjct 35001 T-CAAGCAGGTTGACATTGTTGCTCCCAACAAAATCATGTGCAAGCTTGATAATCGTCTG 34943 Query 325444 TTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTG 325503 |||| | ||||| |||||||| || ||||| ||||| ||||| || ||| Sbjct 34942 CTGCAAACTCATCTCGCCGTGGTGATATGCCGAGTGCTCGGCAACATAACCCACGAGCTG 34883 Query 325504 TGCAACCTTCACGTCGGTCGTCAAATTGCGCTTGAAAGCTGAA-TATATCACTTTCCGTT 325562 |||||||| | |||| | | ||| | ||| ||||| | || |||||||| || | Sbjct 34882 GGCAACCTTAATCTCGGATTTAAGATTCCTCTT-AAAGCAACAGTACATCACTTTTCGCT 34824 Query 325563 GAGAAGGTTTGAAACCATCAACGACCGACGGAATGCTTCGTTCCAGATCGTACCGCGAGA 325622 | ||| || |||||||| || | || || ||||| || | ||| | |||| Sbjct 34823 GTCCAGGCTTAAAACCATCCACCATGGAAGGTATGCTACGCACATTATCTGCCATAGAGA 34764 Query 325623 ACAAAATAAGTTCCTTGTCGATGAAGTC 325650 ||||||| || || |||| |||||||| Sbjct 34763 ACAAAATGAGCTCTTTGTTAATGAAGTC 34736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179648671671962