Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vavraia_20culicis_20subsp._20floridensis_20[genbank_20GCA_5F00019279 5.1_202011-03-22] 379 sequences; 6,118,689 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq10 123 5e-23 >seq10 Length=142875 Score = 123 bits (136), Expect = 5e-23 Identities = 340/511 (67%), Gaps = 10/511 (2%) Strand=Plus/Minus Query 297266 GGGATATTAGTCGACCAACCGGTACCGATTCCACTCGAACCATTCACCAGAATGCTCGGA 297325 || || || ||| |||| || ||||| || ||| | ||| ||||| || | | || Sbjct 35241 GGTATCTTGGTCAACCACCCCGTACCAATACCATCAGCACCGTTCACAAGCACCATTGGC 35182 Query 297326 ATAACAGGCACATAATACTCTGGTTCGATCTTGTCACCGTCATCATACA-GATAT--TTC 297382 | | ||| || ||| | | ||||| || || || || ||| | | ||||| ||| Sbjct 35181 ACGATAGGAACGTAAAATGCAGGTTCTATTTT--CAG-GTTATCCTCTATGATATAATTC 35125 Query 297383 AGAAGATTATCGTCCGTATCGACGAAAACCTGTCGAGTCTGAGGGTTCAGTTTTGTGAAA 297442 |||||| ||| || | || ||||| | || ||| || | ||| ||||| ||| Sbjct 35124 AGAAGAGCATCATCGCTCTCTACGAATATCTTTCGGGTAATATTCGCCAGATTTGTAAAA 35065 Query 297443 ATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCC 297502 || || ||||| || ||| || ||||| |||| | || ||||| || || | Sbjct 35064 ATGTAACGTGCGGAAGCCGCATCTTTGCCACCTTGCAGGCGCGTGCCGAATTGACCGGCT 35005 Query 297503 GGCAACAACCAG-TTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGT 297561 || ||| ||| |||| || ||||| || ||| |||| |||||||| || | || || Sbjct 35004 GGTT-CAAGCAGGTTGACATTGTTGCTCCCAACAAAATCATGTGCAAGCTTGATAATCGT 34946 Query 297562 CCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAA 297621 | |||| | ||||| |||||||| || ||||| ||||| ||||| || Sbjct 34945 CTGCTGCAAACTCATCTCGCCGTGGTGATATGCCGAGTGCTCGGCAACATAACCCACGAG 34886 Query 297622 CTGTGCAACCTTCACGTCGGTCGTCAAATTGCGCTTGAAAGCTGAA-TATATCACTTTCC 297680 ||| |||||||| | |||| | | ||| | ||| ||||| | || |||||||| | Sbjct 34885 CTGGGCAACCTTAATCTCGGATTTAAGATTCCTCTT-AAAGCAACAGTACATCACTTTTC 34827 Query 297681 GTTGAGAAGGTTTGAAACCATCAACGACCGACGGAATGCTTCGTTCCAGATCGTACCGCG 297740 | || ||| || |||||||| || | || || ||||| || | ||| | | Sbjct 34826 GCTGTCCAGGCTTAAAACCATCCACCATGGAAGGTATGCTACGCACATTATCTGCCATAG 34767 Query 297741 AGAACAAAATAAGTTCCTTGTCGATGAAGTC 297771 |||||||||| || || |||| |||||||| Sbjct 34766 AGAACAAAATGAGCTCTTTGTTAATGAAGTC 34736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102874644483650