Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vavraia_20culicis_20subsp._20floridensis_20[genbank_20GCA_5F00019279 5.1_202011-03-22] 379 sequences; 6,118,689 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq16 102 1e-16 seq1 102 1e-16 seq10 86.0 7e-12 >seq16 Length=116485 Score = 102 bits (112), Expect = 1e-16 Identities = 596/937 (64%), Gaps = 28/937 (3%) Strand=Plus/Plus Query 113726 TCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTC 113785 || || |||| |||||||| | |||||| | |||||| | || | || || || Sbjct 64273 TCAGCTGCCAGATCAATCAAACTACGCATCTTCAGCTCCCACGCTGTCTTATAAAGCCTC 64332 Query 113786 TTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACCCGCCTTGACCATGAGA 113845 || || || || || ||| || | || |||| || || | ||| | || || Sbjct 64333 TTTATCTCGTCCGGTATACCCTCAATTCTTTGAATACTTCCCTCTTCCTGTATCAGGATG 64392 Query 113846 TCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTG 113905 | |||||| || | ||| ||| | ||| | || || | || || | | | ||| Sbjct 64393 TTCTTCATCTCATCGCTCCATAGATTGAGCTTCATCAGGTCGTGCATCAGGTACGTGTTG 64452 Query 113906 ACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCA 113965 || || ||||||||||| || ||||| | | ||| ||||| || ||| | |||||| Sbjct 64453 ACCACCTGGAACTCACCCGCAAGCGTGCGGCGCGTATAAATATTCGTGGTGAAGGGCTCA 64512 Query 113966 AAGCACTCATTGTTACCCAAG-ATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCATGAG 114024 |||||||| ||| ||||| || || || | |||| || |||||||| |||| | || Sbjct 64513 AAGCACTCGTTG-TACCCGAGTATCTGAGAGGTGCTTGCAGTGGGCATTAGTGCAACAAG 64571 Query 114025 AAGGCTGTTACGGAGACCCT-TTTCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGT 114083 | | || | | ||| | ||| || || | | ||| | ||| || | || Sbjct 64572 CAAGGAATTCCTCACACCATACTTCGCT-ATCCTGGCACGGAGACCCCGCCAATCATGGT 64630 Query 114084 TGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATC 114143 | | | | || | | |||||||||||| || || | || || || || Sbjct 64631 TTGTCACAGGCACCACGTTCCACATATCAAAATGCAGCACGCCCTGACTCATCGGGCTTC 64690 Query 114144 CCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTG 114203 | ||| | | || || || || | ||| ||| | || ||||||| || || |||| Sbjct 64691 CTTCATAGCTGTCATACGGCCCATACTCCTTCGCAAGCTCACAGCTCGCATCAAGTGCTG 64750 Query 114204 CGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACG 114263 | || || || ||||| ||||| ||| | || ||||| | |||||| ||| Sbjct 64751 CAAAATGAATCGTTTCAAATATGCGCAAATTTACGGCACGCGCCTCCTTTGAATCATACG 64810 Query 114264 CGAGTCGGCA-CAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGA 114322 | || || || | ||| ||||| || || || || || || ||||| || || ||| Sbjct 64811 -GCATCCTCAGCATCACAAAAACATCAGCAAGGCCCTGCACTCCAAGGCCGATGGGACGA 64869 Query 114323 TGTCTCATATTAGACTTTCGAGCGGTCTC---CACGGGATAAAAATTCCTATCGATAACC 114379 ||| | | |||| || | ||||| | ||||| ||||| || || || Sbjct 64870 TGTTTGAGATTACTGTTCC---TTGTCTCGGGTAGAGGATACAAATTTACGTCTATCACT 64926 Query 114380 CTATTTAGATTTTTGGTGACAACCTTTGTG---ATTTCATGAAGCTTTTCGTAATCAAAA 114436 | || || || || ||||| ||| ||| |||| || ||||| || || || ||| Sbjct 64927 TTGTTGAGGTTCTTTACGACAATCTTGGTGACCATTT--TG-AGCTTCTCATAGTC-AAA 64982 Query 114437 CTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAG 114496 ||| |||| | || ||| || | || | | ||| || |||| |||||||| | Sbjct 64983 CTGGCCGTCT-TGCA-TGA---ACCTGGGCAAGCCGAGGGATGCCAAGTTACACACCGCT 65037 Query 114497 GTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTG 114556 | || | || || |||||||| || ||||||| || | || | || || ||| Sbjct 65038 ATTTCGTTCTCCTCGGTGTACTCCATTATTTCCGAGCATAGGTTGCTGCATTTGATCGTG 65097 Query 114557 CCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTC 114616 || | || ||| ||||| | | | || | ||| ||||| |||||| ||||| Sbjct 65098 CCAAGGTGCTTCTGATTGTTCATCCTATTCGCTGAATCTTTGTAGCACATGTACGGCGTG 65157 Query 114617 CCCGTCTCCGTTTGGGACT--TGAGAATAGCCTTCCA 114651 || ||||| | | |||| | |||||||||||||| Sbjct 65158 CCAGTCTCGATCT--GACTGCTCAGAATAGCCTTCCA 65192 >seq1 Length=243087 Score = 102 bits (112), Expect = 1e-16 Identities = 596/937 (64%), Gaps = 28/937 (3%) Strand=Plus/Plus Query 113726 TCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTC 113785 || || |||| |||||||| | |||||| | |||||| | || | || || || Sbjct 193743 TCAGCTGCCAGATCAATCAAACTACGCATCTTCAGCTCCCACGCTGTCTTATAAAGCCTC 193802 Query 113786 TTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACCCGCCTTGACCATGAGA 113845 || || || || || ||| || | || |||| || || | ||| | || || Sbjct 193803 TTTATCTCGTCCGGTATACCCTCAATTCTTTGAATACTTCCCTCTTCCTGTATCAGGATG 193862 Query 113846 TCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTG 113905 | |||||| || | ||| ||| | ||| | || || | || || | | | ||| Sbjct 193863 TTCTTCATCTCATCGCTCCATAGATTGAGCTTCATCAGGTCGTGCATCAGGTACGTGTTG 193922 Query 113906 ACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCA 113965 || || ||||||||||| || ||||| | | ||| ||||| || ||| | |||||| Sbjct 193923 ACCACCTGGAACTCACCCGCAAGCGTGCGGCGCGTATAAATATTCGTGGTGAAGGGCTCA 193982 Query 113966 AAGCACTCATTGTTACCCAAG-ATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCATGAG 114024 |||||||| ||| ||||| || || || | |||| || |||||||| |||| | || Sbjct 193983 AAGCACTCGTTG-TACCCGAGTATCTGAGAGGTGCTTGCAGTGGGCATTAGTGCAACAAG 194041 Query 114025 AAGGCTGTTACGGAGACCCT-TTTCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGT 114083 | | || | | ||| | ||| || || | | ||| | ||| || | || Sbjct 194042 CAAGGAATTCCTCACACCATACTTCGCT-ATCCTGGCACGGAGACCCCGCCAATCATGGT 194100 Query 114084 TGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATC 114143 | | | | || | | |||||||||||| || || | || || || || Sbjct 194101 TTGTCACAGGCACCACGTTCCACATATCAAAATGCAGCACGCCCTGACTCATCGGGCTTC 194160 Query 114144 CCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTG 114203 | ||| | | || || || || | ||| ||| | || ||||||| || || |||| Sbjct 194161 CTTCATAGCTGTCATACGGCCCATACTCCTTCGCAAGCTCACAGCTCGCATCAAGTGCTG 194220 Query 114204 CGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACG 114263 | || || || ||||| ||||| ||| | || ||||| | |||||| ||| Sbjct 194221 CAAAATGAATCGTTTCAAATATGCGCAAATTTACGGCACGCGCCTCCTTTGAATCATACG 194280 Query 114264 CGAGTCGGCA-CAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGA 114322 | || || || | ||| ||||| || || || || || || ||||| || || ||| Sbjct 194281 -GCATCCTCAGCATCACAAAAACATCAGCAAGGCCCTGCACTCCAAGGCCGATGGGACGA 194339 Query 114323 TGTCTCATATTAGACTTTCGAGCGGTCTC---CACGGGATAAAAATTCCTATCGATAACC 114379 ||| | | |||| || | ||||| | ||||| ||||| || || || Sbjct 194340 TGTTTGAGATTACTGTTCC---TTGTCTCGGGTAGAGGATACAAATTTACGTCTATCACT 194396 Query 114380 CTATTTAGATTTTTGGTGACAACCTTTGTG---ATTTCATGAAGCTTTTCGTAATCAAAA 114436 | || || || || ||||| ||| ||| |||| || ||||| || || || ||| Sbjct 194397 TTGTTGAGGTTCTTTACGACAATCTTGGTGACCATTT--TG-AGCTTCTCATAGTC-AAA 194452 Query 114437 CTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAG 114496 ||| |||| | || ||| || | || | | ||| || |||| |||||||| | Sbjct 194453 CTGGCCGTCT-TGCA-TGA---ACCTGGGCAAGCCGAGGGATGCCAAGTTACACACCGCT 194507 Query 114497 GTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTG 114556 | || | || || |||||||| || ||||||| || | || | || || ||| Sbjct 194508 ATTTCGTTCTCCTCGGTGTACTCCATTATTTCCGAGCATAGGTTGCTGCATTTGATCGTG 194567 Query 114557 CCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTC 114616 || | || ||| ||||| | | | || | ||| ||||| |||||| ||||| Sbjct 194568 CCAAGGTGCTTCTGATTGTTCATCCTATTCGCTGAATCTTTGTAGCACATGTACGGCGTG 194627 Query 114617 CCCGTCTCCGTTTGGGACT--TGAGAATAGCCTTCCA 114651 || ||||| | | |||| | |||||||||||||| Sbjct 194628 CCAGTCTCGATCT--GACTGCTCAGAATAGCCTTCCA 194662 >seq10 Length=142875 Score = 86.0 bits (94), Expect = 7e-12 Identities = 189/283 (67%), Gaps = 8/283 (3%) Strand=Plus/Minus Query 171875 AGTTTTGTGAAGATGTACCTCGTTTGAGACGCATCTTTGCCACCCATGAGACGCGTCCCA 171934 || ||||| || ||||| | | || ||||||||||||||| || ||||| || Sbjct 35076 AGATTTGTAAAAATGTAACGTGCGGAAGCCGCATCTTTGCCACCTTGCAGGCGCGTGCCG 35017 Query 171935 AATTGACCACACGGTTCAAGGAGATTGATATTGTTTGAACCCATGTAGTCATTGGCCAAC 171994 |||||||| |||||||| || |||| |||||| || | | |||| || | | Sbjct 35016 AATTGACCGGCTGGTTCAAGCAGGTTGACATTGTTGCTCCCAACAAAATCATGTGCAAGC 34957 Query 171995 TTGACAATCGTATCCGCGAGGGAGACT----TCACCGTGATGGTAGGCCGACTTGTCCGC 172050 |||| |||||| | | | | ||| || ||||| || || ||||| | || || Sbjct 34956 TTGATAATCGTCT----GCTGCAAACTCATCTCGCCGTGGTGATATGCCGAGTGCTCGGC 34901 Query 172051 GACATACGCCGCCAACTGTGCCACCTTCATCTCATCCTTGAGGTTCTTGTGGAAGCACGC 172110 ||||| || | | ||| || ||||| ||||| || || ||| | | ||||| Sbjct 34900 AACATAACCCACGAGCTGGGCAACCTTAATCTCGGATTTAAGATTCCTCTTAAAGCAACA 34841 Query 172111 ATACATGACCTTTCTCTGTGAAGGCTTGAGGCCGTCGGCCATG 172153 ||||| || |||| |||| |||||| | || || ||||| Sbjct 34840 GTACATCACTTTTCGCTGTCCAGGCTTAAAACCATCCACCATG 34798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597350770037320