Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vavraia_20culicis_20subsp._20floridensis_20[genbank_20GCA_5F00019279 5.1_202011-03-22] 379 sequences; 6,118,689 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq57 102 8e-17 seq13 91.5 1e-13 >seq57 Length=32437 Score = 102 bits (112), Expect = 8e-17 Identities = 158/220 (72%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 64229 CTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATC--TGCGACGGTGCGCG 64286 |||||||| ||||| | ||| || || || ||||||||||| | ||| | || Sbjct 25903 CTAAGCACAAGATGCAACGTACTCTCCTTCTGTATGTTGTAATCACTCAGAC--TACGTC 25960 Query 64287 CGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTT 64346 | || |||||||||||||| ||| |||| |||||||||||||| |||||||| || || | Sbjct 25961 CATCCTCAAGCTGCTTGCCCGCAAAAATAAGCCGCTGCTGGTCAGGAGGAATGCCCTCCT 26020 Query 64347 TTTCTTGTATTTTTTGCTTTACA--ACCTCCACTGTATCACCGGCGTCCACTTCTACAGT 64404 | || | ||||| | |||||| || | ||| | | ||| || || || | || Sbjct 26021 TGTCCTTAATTTTATTTTTTACATTACTTATCGTGTCTGA-AGGC-TCGACCTCAAGCGT 26078 Query 64405 TACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 | |||||| || || | || || ||||| ||||||||| Sbjct 26079 AATGGTCTTACCCGTGAGTGTCTTAACGAATATTTGCATT 26118 >seq13 Length=120561 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 64289 TCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTT 64348 || |||||||||||||| ||| | ||||| || ||||| ||||| || || || || || Sbjct 71811 TCCTCAAGCTGCTTGCCCGCAAATATGAGTCGTTGCTGATCGGGTGGTATCCCCTCCTTG 71870 Query 64349 TCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACG 64408 || ||||| || ||||||| ||| | || || | ||||| || | |||| Sbjct 71871 TCCTGTATCTTCGCCTTTACATTCTCGATGGTGTCGGACGACTCCACCTCAAGTGTTATT 71930 Query 64409 GTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||| || | ||||||||||| || ||||| Sbjct 71931 GTCTTGCCTGTGAGTGTTTTTACGAATATCTGCAT 71965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499642432932760