Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vavraia_20culicis_20subsp._20floridensis_20[genbank_20GCA_5F00019279 5.1_202011-03-22] 379 sequences; 6,118,689 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq16 96.9 3e-15 seq1 96.9 3e-15 >seq16 Length=116485 Score = 96.9 bits (106), Expect = 3e-15 Identities = 183/267 (69%), Gaps = 2/267 (1%) Strand=Plus/Minus Query 123604 TCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAG- 123662 |||| || || |||||||||||| ||||||||| | || |||| | ||||||| Sbjct 65167 TCGAGACTGGCACGCCGTACATGTGCTACAAAGATTCAGCGAATAGGATGAACAATCAGA 65108 Query 123663 AGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGAT 123722 |||| ||| || || || ||||| || || || ||||| ||||| || || |||| ||| Sbjct 65107 AGCACCTT-GGCACGATCAAATGCAGCAACCTATGCTCGGAAATAATGGAGTACACCGAG 65049 Query 123723 GCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAATCGTTGCGTCGAAAAC 123782 | | || | || |||||||| ||||| || | || || | | | | || || Sbjct 65048 GAGAACGAAATAGCGGTGTGTAACTTGGCATCCCTCGGCTTGCCCAGGTTCATGCAAGAC 64989 Query 123783 GGCGCTTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGTAAAGAATTTGAAC 123842 ||| ||| | | | | ||||||| | || || | ||| |||||||| | ||| Sbjct 64988 GGCCAGTTTGACTATGAGAAGCTCAAAATGGTCACCAAGATTGTCGTAAAGAACCTCAAC 64929 Query 123843 AAAATTATCGATGTTAATTTTTATCCT 123869 ||| | || || || ||||| |||||| Sbjct 64928 AAAGTGATAGACGTAAATTTGTATCCT 64902 >seq1 Length=243087 Score = 96.9 bits (106), Expect = 3e-15 Identities = 183/267 (69%), Gaps = 2/267 (1%) Strand=Plus/Minus Query 123604 TCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAG- 123662 |||| || || |||||||||||| ||||||||| | || |||| | ||||||| Sbjct 194637 TCGAGACTGGCACGCCGTACATGTGCTACAAAGATTCAGCGAATAGGATGAACAATCAGA 194578 Query 123663 AGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGAT 123722 |||| ||| || || || ||||| || || || ||||| ||||| || || |||| ||| Sbjct 194577 AGCACCTT-GGCACGATCAAATGCAGCAACCTATGCTCGGAAATAATGGAGTACACCGAG 194519 Query 123723 GCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAATCGTTGCGTCGAAAAC 123782 | | || | || |||||||| ||||| || | || || | | | | || || Sbjct 194518 GAGAACGAAATAGCGGTGTGTAACTTGGCATCCCTCGGCTTGCCCAGGTTCATGCAAGAC 194459 Query 123783 GGCGCTTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGTAAAGAATTTGAAC 123842 ||| ||| | | | | ||||||| | || || | ||| |||||||| | ||| Sbjct 194458 GGCCAGTTTGACTATGAGAAGCTCAAAATGGTCACCAAGATTGTCGTAAAGAACCTCAAC 194399 Query 123843 AAAATTATCGATGTTAATTTTTATCCT 123869 ||| | || || || ||||| |||||| Sbjct 194398 AAAGTGATAGACGTAAATTTGTATCCT 194372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452001058634840