Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vavraia_20culicis_20subsp._20floridensis_20[genbank_20GCA_5F00019279 5.1_202011-03-22] 379 sequences; 6,118,689 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq16 116 5e-21 seq1 116 5e-21 seq10 89.7 6e-13 seq5 82.4 9e-11 >seq16 Length=116485 Score = 116 bits (128), Expect = 5e-21 Identities = 673/1060 (63%), Gaps = 28/1060 (3%) Strand=Plus/Plus Query 115564 TAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTT- 115622 || ||||| || ||||| || ||| | || | | || | |||||| | || ||| Sbjct 64150 TAATACATGCCGGTCTTAAGTCCCCGTTTAAAACCGTAAAAATGCATGCTCGTCAGCTTA 64209 Query 115623 GGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCC 115682 ||| | |||||| | |||| || | || | || || || || || | | || | Sbjct 64210 GGATA-TGTTGGCTGTGCCATAAAAATATTTAGGCTCTGCGACTGGTCAACATACGGTGC 64268 Query 115683 CCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAG 115742 || || || |||| |||||||| | |||||| | |||||| | || | || || Sbjct 64269 CCTGTCAGCTGCCAGATCAATCAAACTACGCATCTTCAGCTCCCACGCTGTCTTATAAAG 64328 Query 115743 GTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCTTGACCAT 115802 |||| || || || || ||| || | || |||| ||| || || ||| | || Sbjct 64329 CCTCTTTATCTCGTCCGGTATACCCTCAATTCTTTGAATACTTCCCTCTTCCTGTATCAG 64388 Query 115803 GAGATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTGCTT 115862 || | |||||| || | ||| ||| | |||| | || || | || |||| | | Sbjct 64389 GATGTTCTTCATCTCATCGCTCCATAGATTGAGCTTCATCAGGTCGTGCATCAGGTACGT 64448 Query 115863 ATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGG 115922 ||||| || ||||||||||| || ||||| | | ||| || || || ||| | || Sbjct 64449 GTTGACCACCTGGAACTCACCCGCAAGCGTGCGGCGCGTATAAATATTCGTGGTGAAGGG 64508 Query 115923 CTCAAAGCACTCATTGTTACCCAAG-ATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCA 115981 |||||||||||| ||| ||||| || || || | ||| || |||||||| |||| | Sbjct 64509 CTCAAAGCACTCGTTG-TACCCGAGTATCTGAGAGGTGCTTGCAGTGGGCATTAGTGCAA 64567 Query 115982 TGAGAAGGCTGTTGCGGAGACC-CACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCG 116040 || | | || | | ||| || | || || | | ||| | ||| || Sbjct 64568 CAAGCAAGGAATTCCTCACACCATACTTCGCT-ATCCTGGCACGGAGACCCCGCCAATCA 64626 Query 116041 TAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGC 116100 | ||| | | | || | | |||||||||||| || || | || || | || Sbjct 64627 TGGTTTGTCACAGGCACCACGTTCCACATATCAAAATGCAGCACGCCCTGACTCATCGGG 64686 Query 116101 GATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGG 116160 ||| ||| | | ||||| || || | ||| ||| | || ||||||| || || Sbjct 64687 CTTCCTTCATAGCTGTCATACGGCCCATACTCCTTCGCAAGCTCACAGCTCGCATCAAGT 64746 Query 116161 GCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCA 116220 ||||| || || || ||||| ||||| ||| | || ||||| | |||||| Sbjct 64747 GCTGCAAAATGAATCGTTTCAAATATGCGCAAATTTACGGCACGCGCCTCCTTTGAATCA 64806 Query 116221 AACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGG 116280 ||| | | || | ||| ||||| || || || || || || ||||| || || Sbjct 64807 TACGGCATCCTCAGCATCACAAAAACATCAGCAAGGCCCTGCACTCCAAGGCCGATGGGA 64866 Query 116281 CGATGTCTCATATTAGACTTTCGAGCGGTCTC---CACGGGATAAAAATTCCTATCGATA 116337 |||||| | | |||| || | ||||| | ||||| ||||| || || Sbjct 64867 CGATGTTTGAGATTACTGTTCC---TTGTCTCGGGTAGAGGATACAAATTTACGTCTATC 64923 Query 116338 ACCCTATTTAGATTTTTGGTGACAACCTTTGTG---ATTTCATGAAGCTTTTCGTAATCA 116394 || | || || || || ||||| ||| ||| |||| || ||||| || || || Sbjct 64924 ACTTTGTTGAGGTTCTTTACGACAATCTTGGTGACCATTT--TG-AGCTTCTCATAGTC- 64979 Query 116395 AAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACA 116454 |||||| |||| | || ||| || | || | | ||| || |||| |||||||| Sbjct 64980 AAACTGGCCGTCT-TGCA-TGA---ACCTGGGCAAGCCGAGGGATGCCAAGTTACACACC 65034 Query 116455 GAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATG 116514 | | || | || || |||||||| || ||||||| || | || | || || Sbjct 65035 GCTATTTCGTTCTCCTCGGTGTACTCCATTATTTCCGAGCATAGGTTGCTGCATTTGATC 65094 Query 116515 GTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGC 116574 ||||| | || ||| ||||| | | | || | ||| |||||| ||| || ||| Sbjct 65095 GTGCCAAGGTGCTTCTGATTGTTCATCCTATTCGCTGAATCTTTGTAGCACATGTACGGC 65154 Query 116575 GTCCCCGTCTCCGTTTGGGACT--TGAGAATAGCCTTCCA 116612 || || ||||| | | |||| | |||||||||||||| Sbjct 65155 GTGCCAGTCTCGATCT--GACTGCTCAGAATAGCCTTCCA 65192 >seq1 Length=243087 Score = 116 bits (128), Expect = 5e-21 Identities = 673/1060 (63%), Gaps = 28/1060 (3%) Strand=Plus/Plus Query 115564 TAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTT- 115622 || ||||| || ||||| || ||| | || | | || | |||||| | || ||| Sbjct 193620 TAATACATGCCGGTCTTAAGTCCCCGTTTAAAACCGTAAAAATGCATGCTCGTCAGCTTA 193679 Query 115623 GGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCC 115682 ||| | |||||| | |||| || | || | || || || || || | | || | Sbjct 193680 GGATA-TGTTGGCTGTGCCATAAAAATATTTAGGCTCTGCGACTGGTCAACATACGGTGC 193738 Query 115683 CCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAG 115742 || || || |||| |||||||| | |||||| | |||||| | || | || || Sbjct 193739 CCTGTCAGCTGCCAGATCAATCAAACTACGCATCTTCAGCTCCCACGCTGTCTTATAAAG 193798 Query 115743 GTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCTTGACCAT 115802 |||| || || || || ||| || | || |||| ||| || || ||| | || Sbjct 193799 CCTCTTTATCTCGTCCGGTATACCCTCAATTCTTTGAATACTTCCCTCTTCCTGTATCAG 193858 Query 115803 GAGATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTGCTT 115862 || | |||||| || | ||| ||| | |||| | || || | || |||| | | Sbjct 193859 GATGTTCTTCATCTCATCGCTCCATAGATTGAGCTTCATCAGGTCGTGCATCAGGTACGT 193918 Query 115863 ATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGG 115922 ||||| || ||||||||||| || ||||| | | ||| || || || ||| | || Sbjct 193919 GTTGACCACCTGGAACTCACCCGCAAGCGTGCGGCGCGTATAAATATTCGTGGTGAAGGG 193978 Query 115923 CTCAAAGCACTCATTGTTACCCAAG-ATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCA 115981 |||||||||||| ||| ||||| || || || | ||| || |||||||| |||| | Sbjct 193979 CTCAAAGCACTCGTTG-TACCCGAGTATCTGAGAGGTGCTTGCAGTGGGCATTAGTGCAA 194037 Query 115982 TGAGAAGGCTGTTGCGGAGACC-CACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCG 116040 || | | || | | ||| || | || || | | ||| | ||| || Sbjct 194038 CAAGCAAGGAATTCCTCACACCATACTTCGCT-ATCCTGGCACGGAGACCCCGCCAATCA 194096 Query 116041 TAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGC 116100 | ||| | | | || | | |||||||||||| || || | || || | || Sbjct 194097 TGGTTTGTCACAGGCACCACGTTCCACATATCAAAATGCAGCACGCCCTGACTCATCGGG 194156 Query 116101 GATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGG 116160 ||| ||| | | ||||| || || | ||| ||| | || ||||||| || || Sbjct 194157 CTTCCTTCATAGCTGTCATACGGCCCATACTCCTTCGCAAGCTCACAGCTCGCATCAAGT 194216 Query 116161 GCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCA 116220 ||||| || || || ||||| ||||| ||| | || ||||| | |||||| Sbjct 194217 GCTGCAAAATGAATCGTTTCAAATATGCGCAAATTTACGGCACGCGCCTCCTTTGAATCA 194276 Query 116221 AACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGG 116280 ||| | | || | ||| ||||| || || || || || || ||||| || || Sbjct 194277 TACGGCATCCTCAGCATCACAAAAACATCAGCAAGGCCCTGCACTCCAAGGCCGATGGGA 194336 Query 116281 CGATGTCTCATATTAGACTTTCGAGCGGTCTC---CACGGGATAAAAATTCCTATCGATA 116337 |||||| | | |||| || | ||||| | ||||| ||||| || || Sbjct 194337 CGATGTTTGAGATTACTGTTCC---TTGTCTCGGGTAGAGGATACAAATTTACGTCTATC 194393 Query 116338 ACCCTATTTAGATTTTTGGTGACAACCTTTGTG---ATTTCATGAAGCTTTTCGTAATCA 116394 || | || || || || ||||| ||| ||| |||| || ||||| || || || Sbjct 194394 ACTTTGTTGAGGTTCTTTACGACAATCTTGGTGACCATTT--TG-AGCTTCTCATAGTC- 194449 Query 116395 AAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACA 116454 |||||| |||| | || ||| || | || | | ||| || |||| |||||||| Sbjct 194450 AAACTGGCCGTCT-TGCA-TGA---ACCTGGGCAAGCCGAGGGATGCCAAGTTACACACC 194504 Query 116455 GAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATG 116514 | | || | || || |||||||| || ||||||| || | || | || || Sbjct 194505 GCTATTTCGTTCTCCTCGGTGTACTCCATTATTTCCGAGCATAGGTTGCTGCATTTGATC 194564 Query 116515 GTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGC 116574 ||||| | || ||| ||||| | | | || | ||| |||||| ||| || ||| Sbjct 194565 GTGCCAAGGTGCTTCTGATTGTTCATCCTATTCGCTGAATCTTTGTAGCACATGTACGGC 194624 Query 116575 GTCCCCGTCTCCGTTTGGGACT--TGAGAATAGCCTTCCA 116612 || || ||||| | | |||| | |||||||||||||| Sbjct 194625 GTGCCAGTCTCGATCT--GACTGCTCAGAATAGCCTTCCA 194662 >seq10 Length=142875 Score = 89.7 bits (98), Expect = 6e-13 Identities = 190/283 (67%), Gaps = 8/283 (3%) Strand=Plus/Minus Query 175895 AGTTTTGTGAAGATGTACCTCGTTTGAGACGCATCTTTGCCACCCATGAGACGCGTCCCA 175954 || ||||| || ||||| | | || ||||||||||||||| || ||||| || Sbjct 35076 AGATTTGTAAAAATGTAACGTGCGGAAGCCGCATCTTTGCCACCTTGCAGGCGCGTGCCG 35017 Query 175955 AATTGACCACATGGCTCAAGGAGATTGATATTGTTTGAGCCCATATAGTCATTCGCCAAC 176014 |||||||| ||| ||||| || |||| |||||| || | | | |||| || | | Sbjct 35016 AATTGACCGGCTGGTTCAAGCAGGTTGACATTGTTGCTCCCAACAAAATCATGTGCAAGC 34957 Query 176015 TTGACAATCGTATCCGCGAGGGAGACT----TCACCGTGATGGTAGGCCGACTTGTCCGC 176070 |||| |||||| | | | | ||| || ||||| || || ||||| | || || Sbjct 34956 TTGATAATCGTCT----GCTGCAAACTCATCTCGCCGTGGTGATATGCCGAGTGCTCGGC 34901 Query 176071 CACATACGCCGCCAACTGCGCCACCTTCATCTCATCCTTGAGGTTCTTGTGGAAGCACGC 176130 ||||| || | | ||| || ||||| ||||| || || ||| | | ||||| Sbjct 34900 AACATAACCCACGAGCTGGGCAACCTTAATCTCGGATTTAAGATTCCTCTTAAAGCAACA 34841 Query 176131 ATACATGACCTTTCTCTGTGAAGGCTTGAGGCCGTCGGCCATG 176173 ||||| || |||| |||| |||||| | || || ||||| Sbjct 34840 GTACATCACTTTTCGCTGTCCAGGCTTAAAACCATCCACCATG 34798 >seq5 Length=183138 Score = 82.4 bits (90), Expect = 9e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 127517 ACAGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGA 127576 |||||||| | | || || ||||||||||| || || | || || ||||| ||| Sbjct 59915 ACAGCAAATTGATAATGCAGGCCCTCGTCACGTGATATCAACTCGTTAGAGAATGTAAGA 59856 Query 127577 CCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAG 127636 || ||||| ||||| || || |||| |||||| || | || || ||| ||||| Sbjct 59855 CCGGGCATAAGACCGCGTTTTTTCAGCCAGAAGATAGATGCGAACGATCCACTAAAGAAC 59796 Query 127637 ATCCCCTCCACACACGCGAACGCAA 127661 | |||||| |||||||| ||||||| Sbjct 59795 AGCCCCTCAACACACGCAAACGCAA 59771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613504293509640