Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vavraia_20culicis_20subsp._20floridensis_20[genbank_20GCA_5F00019279 5.1_202011-03-22] 379 sequences; 6,118,689 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq5 118 1e-21 seq13 111 2e-19 seq57 109 5e-19 >seq5 Length=183138 Score = 118 bits (130), Expect = 1e-21 Identities = 190/273 (70%), Gaps = 0/273 (0%) Strand=Plus/Minus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||| || ||||| || ||| |||||||| ||| |||||||| || || ||||| Sbjct 59643 GTACGTATCGATCAGCAACGAGTACATTTCACTGTGCACGTTCTCGATCATAATCTGAAA 59584 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 |||||||||||| |||||||| | |||||| || | | ||| ||| | ||||| Sbjct 59583 GCCGTAAAAGCAGCGCGCCTCTTTGAGCTGCACCTCGCGCGAGAAGTTCTCCAAGAGATT 59524 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 ||||| ||||| ||||| || || || || || ||||||| | || |||||||| Sbjct 59523 CTCGTTCACGATACCGTCCGATGCAGCAAAGAATGCGAGCACGTACGATATAAAATGGCG 59464 Query 133347 CTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGAC 133406 ||| | ||||||| || | ||| || | ||||| || || || || || || || Sbjct 59463 CTCATCTCCGTTCAACCGGTTCCAATCATCAATATCCTTTGATAGATCAACTTCTTCCAC 59404 Query 133407 GGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 ||||| || || | || | ||||||||| Sbjct 59403 TGTCCAGAATGATGATAATGCCTGTTTGTACAT 59371 >seq13 Length=120561 Score = 111 bits (122), Expect = 2e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| |||||||||||||| ||||| ||||| || || || | || || ||| | || Sbjct 71965 ATGCAGATATTCGTAAAAACACTCACAGGCAAGACAATAACACTTGAGGTGGAGTCGTCC 71906 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || || | ||||| ||||| || || |||| || Sbjct 71905 GACACCATCGAGAATGTAAAGGCGAAGATACAGGACAAGGAGGGGATACCACCCGATCAG 71846 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || ||||| | |||||||| ||||| || || | || || || | |||||| || Sbjct 71845 CAACGACTCATATTTGCGGGCAAGCAGCTTGAGGATGGACGGACGCTGAGCGACTATAAT 71786 Query 38424 ATCCAAAAGGA-AGCGACGCTGCATTTGGTGCT 38455 || || ||||| ||| |||||||| |||||||| Sbjct 71785 ATACAGAAGGAGAGC-ACGCTGCACTTGGTGCT 71754 >seq57 Length=32437 Score = 109 bits (120), Expect = 5e-19 Identities = 166/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||||||||| || || |||||||| || ||||| || | || |||||| | | Sbjct 26118 AATGCAAATATTCGTTAAGACACTCACGGGTAAGACCATTACGCTTGAGGTCGAGCCTTC 26059 Query 38303 CGACAGCGTGCA--AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 |||| || | || | | ||| | ||||| ||||| ||||| ||||| | ||| Sbjct 26058 AGACA-CGATAAGTAATG-TAAAAAATAAAATTAAGGACAAGGAGGGCATTCCTCCTGAC 26001 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || |||||||| |||| |||||||| ||||| || || | || | || | || ||| Sbjct 26000 CAGCAGCGGCTTATTTTTGCGGGCAAGCAGCTTGAGGATGGACGTAGTCTGAGTGATTAC 25941 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCCG 38473 ||||| || ||||| ||| ||||| | ||||| | |||| || || || Sbjct 25940 AACATACAGAAGGAGAGTACGTTGCATCTTGTGCTTAGGCTGAGGGGAGGACG 25888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500170430431360