Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vavraia_20culicis_20subsp._20floridensis_20[genbank_20GCA_5F00019279 5.1_202011-03-22] 379 sequences; 6,118,689 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq10 87.8 2e-12 >seq10 Length=142875 Score = 87.8 bits (96), Expect = 2e-12 Identities = 278/429 (65%), Gaps = 8/429 (2%) Strand=Plus/Minus Query 168291 CCCGTACCGATACCTTCGGTTCCATTCACGAGAACCATTGGTATGGTTGGCATGTAAAAG 168350 |||||||| ||||| || | || ||||| || |||||||| | | | || | |||||| Sbjct 35223 CCCGTACCAATACCATCAGCACCGTTCACAAGCACCATTGGCACGATAGGAACGTAAAAT 35164 Query 168351 TCTGGTTCAATTGAGCGCCCATCATCATCCAAGTAGTTGAGGATCGGGTCATCCCGAGGA 168410 | ||||| ||| | ||| || | || || || | | ||||| | Sbjct 35163 GCAGGTTCTATTTTCAGGTTATCCTCTATGATATAATTCAGAAGAGCATCATCGCTCTCT 35104 Query 168411 TCAAAGATCTTGCGAGCCTCTTTGGTAAGTTTTGTGAAAATGTACCTCGTCTGAGAAGCA 168470 | || ||||| || | || | || ||||| |||||||| | | || ||| Sbjct 35103 ACGAATATCTTTCGGGTAATATTCGCCAGATTTGTAAAAATGTAACGTGCGGAAGCCGCA 35044 Query 168471 TCCTTACCACCCATGAGACGCGTACCAAATTGACCACACGGTTCAAGAAGGTTAATGTTG 168530 || || ||||| || ||||| || |||||||| |||||||| ||||| | ||| Sbjct 35043 TCTTTGCCACCTTGCAGGCGCGTGCCGAATTGACCGGCTGGTTCAAGCAGGTTGACATTG 34984 Query 168531 TTTGAACCCGTGTAGTCGTTTGCCAACTTAACAATCGTGTCCGCTAAGGATACT----TC 168586 || || | || | ||| | ||| | |||||| | ||| | | ||| || Sbjct 34983 TTGCTCCCAACAAAATCATGTGCAAGCTTGATAATCGTCT--GCT--GCAAACTCATCTC 34928 Query 168587 ACCATGGTGGTACGCAGACTTGTCCGCGACATATGCCGCCAGTTGTGCCACCTTCATTTC 168646 || ||||| || || || | || || ||||| || | || || || ||||| || || Sbjct 34927 GCCGTGGTGATATGCCGAGTGCTCGGCAACATAACCCACGAGCTGGGCAACCTTAATCTC 34868 Query 168647 ATCCTTGAGATTCTTATGGAAGCAAGCATACATCACTTTCCTCTGTGAAGGCTTGAGACC 168706 || |||||| | | |||||| ||||||||||| | |||| |||||| | ||| Sbjct 34867 GGATTTAAGATTCCTCTTAAAGCAACAGTACATCACTTTTCGCTGTCCAGGCTTAAAACC 34808 Query 168707 ATCCGCCAT 168715 |||| |||| Sbjct 34807 ATCCACCAT 34799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589978004965960