Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vavraia_20culicis_20subsp._20floridensis_20[genbank_20GCA_5F00019279 5.1_202011-03-22] 379 sequences; 6,118,689 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq13 111 3e-19 seq57 109 1e-18 >seq13 Length=120561 Score = 111 bits (122), Expect = 3e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || ||| ||| || || ||||| || ||| || || | ||||| || ||||| Sbjct 71762 GTGCAGCGTGCTCTCCTTCTGTATATTATAGTCGCTCAGCGTCCGTCCATCCTCAAGCTG 71821 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || || || |||||||| || || || || || || || ||||| || || || Sbjct 71822 CTTGCCCGCAAATATGAGTCGTTGCTGATCGGGTGGTATCCCCTCCTTGTCCTGTATCTT 71881 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| || ||||| |||||||| || ||||| ||||| || | ||||| ||||| Sbjct 71882 CGCCTTTACATTCTCGATGGTGTCGGACGACTCCACCTCAAGTGTTATTGTCTTGCCTGT 71941 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | ||||||||||| | ||||| Sbjct 71942 GAGTGTTTTTACGAATATCTGCAT 71965 >seq57 Length=32437 Score = 109 bits (120), Expect = 1e-18 Identities = 166/234 (71%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 194949 CTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAA 195008 ||| || || || |||||||| ||| | | ||||| || |||||||| || || || Sbjct 25926 CTCCTTCTGTATGTTGTAATCACTCAGACTACGTCCATCCTCAAGCTGCTTGCCCGCAAA 25985 Query 195009 GATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTT 195068 ||||| || || ||||| ||||||||||| || ||||| | |||||| | || || || Sbjct 25986 AATAAGCCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTTAATTTTATTTTTTACATT 26045 Query 195069 CTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTAC 195128 || ||||| ||| || || ||||| |||| ||||| || || | || || || Sbjct 26046 ACTTATCGTGTCTGAAGGCTCGACCTCAAGCGTAATGGTCTTACCCGTGAGTGTCTTAAC 26105 Query 195129 GAACACTTGCATTTATGGTTAC-TTGGTGGTTCTTTTTAAATATTTTTTGTTGA 195181 ||| | ||||||| | || | | || | ||| || || || |||| || |||| Sbjct 26106 GAATATTTGCATTAAGGGGTGCGTTTTTTGTT-TTATTTAAGATTTGTTATTGA 26158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109476212426693