Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vavraia_20culicis_20subsp._20floridensis_20[genbank_20GCA_5F00019279 5.1_202011-03-22] 379 sequences; 6,118,689 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq57 122 7e-23 seq13 104 2e-17 >seq57 Length=32437 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| |||| | ||| | ||| | ||| ||||| || || || ||||||||| Sbjct 25891 CCTCCCCTCAGCCTAAGCACAAGATGCAACGTACTCTCCTTCTGTATGTTGTAATCACTC 25950 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||||| || | || || | |||||| || ||||| || || ||||| || || | ||| Sbjct 25951 AGACTACGTCCATCCTCAAGCTGCTTGCCCGCAAAAATAAGCCGCTGCTGGTCAGGAGGA 26010 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| |||| || | ||||||| || | | ||||| | ||| ||| Sbjct 26011 ATGCCCTCCTTGTCCTTAATTTTATTTTTTACATTACTTATCGTGTCTGAAGGCTCGACC 26070 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | |||||| || || ||||| | || || || || || ||||| Sbjct 26071 TCAAGCGTAATGGTCTTACCCGTGAGTGTCTTAACGAATATTTGCAT 26117 >seq13 Length=120561 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| |||| |||| | |||||| || ||||||||||| || || ||||| || || Sbjct 71738 GCCACCCCGCAGCCTGAGCACCAAGTGCAGCGTGCTCTCCTTCTGTATATTATAGTCGCT 71797 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || | || || | |||||| || |||||||| ||||| || ||||| | || Sbjct 71798 CAGCGTCCGTCCATCCTCAAGCTGCTTGCCCGCAAATATGAGTCGTTGCTGATCGGGTGG 71857 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | ||||||||||| ||||| |||||| | | | || |||| |||||| Sbjct 71858 TATCCCCTCCTTGTCCTGTATCTTCGCCTTTACATTCTCGATGGTGTCGGACGACTCCAC 71917 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCG 48768 ||| | || || || || || || | |||||||| || |||||||||| Sbjct 71918 CTCAAGTGTTATTGTCTTGCCTGTGAGTGTTTTTACGAATATCTGCATCG 71967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380935840425417