Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vavraia_20culicis_20subsp._20floridensis_20[genbank_20GCA_5F00019279 5.1_202011-03-22] 379 sequences; 6,118,689 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq5 100 5e-16 seq16 84.2 4e-11 seq1 84.2 4e-11 >seq5 Length=183138 Score = 100 bits (110), Expect = 5e-16 Identities = 544/853 (64%), Gaps = 19/853 (2%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || | || || ||||||||||| || |||||||| || ||| || ||||| Sbjct 60204 CTGGTACTCAGCAACCCTCTTCTCAAAGAAATTCGTCTTCCCAAACAGCGAAATATTCTC 60145 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958 |||||| || || || | | ||| ||||| ||| | ||||| | | || | Sbjct 60144 CATGAAATCAAACGGATTCGTTACGTTGTACACACGTCCAATGCCCAAATCAACAAGTAT 60085 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018 |||||| ||| | || ||||| | |||| | || |||||| || || || || Sbjct 60084 TCCATCCGCAACGAATTCAATGTACTGGCACATCAACTTGCAGTTCATACCGATCAGTGA 60025 Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078 ||| ||||||| | | || |||||| | || || | ||| || ||| |||||||| Sbjct 60024 CACAGGCAAAGAGTCAGAGACAAACTCTTCTTCAATTTCCACTGCCTCCTTCACAATCT- 59966 Query 48079 CTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGC---TTG-GCATAGAGCATGCAGG 48134 || | | || | || ||| || | | || ||| |||| || | || | Sbjct 59965 CTAATACCTTTTCTTTTGGGCATTG--GCCGATGAGCGTTTTGTTCATA-AGAA--CA-G 59912 Query 48135 CAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAG 48194 |||| | |||| ||| ||||| || || | | |||| ||||| ||||| | Sbjct 59911 CAAATTGATAATGCAGGCCCTCGTCACGTGATATCAACTCGTTAGAGAATGTAAGACCGG 59852 Query 48195 GCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGC 48254 |||| | || | | ||| |||||||| || | ||||| || ||| ||||| | | Sbjct 59851 GCATAAGACCGCGTTTTTTCAGCCAGAAGATAGATGCGAACGATCCACTAAAGAACAGCC 59792 Query 48255 CCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCC 48314 |||| || ||| ||||| | | | | | ||| || | || || |||| Sbjct 59791 CCTCAACACACGCAAACGCAATAACACGTGTTGCAAAATCAGAATCTTTATCATTTATCC 59732 Query 48315 A-GGAAAGCGCCCAGTCTGCCTTCTTCTTGA-TGCATGGCATCGTCTCTATGGCCCGG-- 48370 | ||||| ||| || ||||| |||| | | || | || | | || || | Sbjct 59731 ATTTAAAGC-ACCACTCAGCCTTTCTCTTCACCGTATTG-ATGTTGGCAATCGCATTGAA 59674 Query 48371 AAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATC 48430 |||| || | | || |||| ||| || || ||| || |||| | |||||| Sbjct 59673 AAGAAAGTCCTTCTCT-TCCTG-ATCCTTAATGTACGTATCGATCAGCAACGAGTACATT 59616 Query 48431 TCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACC 48490 ||| |||||| ||||| || ||||| || ||||| ||| | ||||| | | Sbjct 59615 TCACTGTGCACGTTCTCGATCATAATCTGAAAGCCGTAAAAGCAGCGCGCCTCTTTGAGC 59556 Query 48491 TGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCA 48550 ||||| || ||||| |||||| |||||||| || || || || || || |||||| Sbjct 59555 TGCACCTCGCGCGAGAAGTTCTCCAAGAGATTCTCGTTCACGATACCGTCCGATGCAGCA 59496 Query 48551 AAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCC 48610 ||||| || || || | | ||||||||||| | | | | ||||| | Sbjct 59495 AAGAATGCGAGCACGTACGATATAAAATGGCGCTCATCTCCGTTCAACCGGTTCCAATCA 59436 Query 48611 TGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTG 48670 | | || || || || ||||||||||| |||||||| || | | ||| | |||| Sbjct 59435 TCAATATCCTTTGATAGATCAACTTCTTCCACTGTCCAGAATGATGATAATGCCTGTTTG 59376 Query 48671 TACATGCCCCATA 48683 ||||| ||||| Sbjct 59375 TACATCTGCCATA 59363 >seq16 Length=116485 Score = 84.2 bits (92), Expect = 4e-11 Identities = 119/167 (71%), Gaps = 3/167 (2%) Strand=Plus/Plus Query 213813 ACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTC 213872 || ||| |||||||||| || || | ||||||||| ||||| | || | | | | | Sbjct 65335 ACCCTCCGCATGAACAGATCAGGTATCCACAGCGCTGTGAAAATATCGCGTGCACGCAGC 65394 Query 213873 TCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGC 213932 || || || | ||| ||||| | ||| || || |||||||| || | |||||||||| Sbjct 65395 TCCTCTTTACCCGTGTTCTTGCGTATATCAAGGAACTCAAAGATATCGGAGTGCCACGGC 65454 Query 213933 TCCATGTAGATGGCAAAGGCGCCCGGCC---TCTTGCCGCCCTGGTC 213976 || | |||||| || | | ||||| | |||||||||| || || Sbjct 65455 TCGACGTAGATCGCCATCGATCCCGGTCGTTTCTTGCCGCCTTGATC 65501 >seq1 Length=243087 Score = 84.2 bits (92), Expect = 4e-11 Identities = 119/167 (71%), Gaps = 3/167 (2%) Strand=Plus/Plus Query 213813 ACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTC 213872 || ||| |||||||||| || || | ||||||||| ||||| | || | | | | | Sbjct 194805 ACCCTCCGCATGAACAGATCAGGTATCCACAGCGCTGTGAAAATATCGCGTGCACGCAGC 194864 Query 213873 TCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGC 213932 || || || | ||| ||||| | ||| || || |||||||| || | |||||||||| Sbjct 194865 TCCTCTTTACCCGTGTTCTTGCGTATATCAAGGAACTCAAAGATATCGGAGTGCCACGGC 194924 Query 213933 TCCATGTAGATGGCAAAGGCGCCCGGCC---TCTTGCCGCCCTGGTC 213976 || | |||||| || | | ||||| | |||||||||| || || Sbjct 194925 TCGACGTAGATCGCCATCGATCCCGGTCGTTTCTTGCCGCCTTGATC 194971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931528386863360