Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vavraia_20culicis_20subsp._20floridensis_20[genbank_20GCA_5F00019279 5.1_202011-03-22] 379 sequences; 6,118,689 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq16 114 2e-20 seq1 114 2e-20 seq5 109 1e-18 >seq16 Length=116485 Score = 114 bits (126), Expect = 2e-20 Identities = 326/491 (66%), Gaps = 15/491 (3%) Strand=Plus/Plus Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGG 221773 |||| ||||||||| || | |||| || | ||| |||| || || || | || ||| Sbjct 65020 GCCAAGTTACACACCGCTATTTCGTTCTCCTCGGTGTACTCCATTATTTCCGAGCATAGG 65079 Query 221774 TTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTG 221833 |||||||| ||||| || || ||||| || ||||| | | | ||| || | || ||| Sbjct 65080 TTGCTGCATTTGATCGTGCCAAGGTGCTTCTGATTGTTCATCCTATTCGCTGAATCTTTG 65139 Query 221834 TAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCT 221893 ||| ||| | || ||||||||| | |||| |||||| | ||| | | | Sbjct 65140 TAGCACATGTACGGCGTGCCAGTCTCGATCTGACTGCTCAGAATAGCCTTCCACAACT-T 65198 Query 221894 CTG-GCGCTCACCGTCCTCTTGACTGCACCCT--CGGTCTTTTCATACCCGGTATAGAGC 221950 ||| || | ||| |||| | || || | | ||||||| ||| || | Sbjct 65199 CTGTGCACGCACGGTCCGCC-----GCGCCATGCCATTCTTTTCGTACATCTCGTACGCC 65253 Query 221951 ATGTCAAACTTTTCACCGTACGCCTCGTCCAGGC-CTGGACACC-TGGCGGGACACATCA 222008 ||||||||| || |||||| | || |||| | ||||| | | | ||| | || Sbjct 65254 TTGTCAAACTCATCTCCGTACAGATTGTACAGGTTCGGGACATCATCGTTGGAGAA--CA 65311 Query 222009 GACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGC-C 222067 | ||||| || | || | |||||| ||||||| || || || ||||||||||| Sbjct 65312 GCGACCAGTTCTCATCGTTGTGCACCCTCCGCATGAACAGATCAGGTATCCACAGCGCTG 65371 Query 222068 TGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAAC 222127 ||||| | ||| | | ||| ||||||| || |||| || | | ||| | ||| Sbjct 65372 TGAAA-ATATCGCGTGCACGCAGCTCCTCTTTACCCGTGTTCTTGCGTATATCAAGGAAC 65430 Query 222128 TCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTG 222187 ||||| || || | |||||||||||| | |||| |||| | || ||||| || ||| Sbjct 65431 TCAAAGATATCGGAGTGCCACGGCTCGACGTAGATCGCCATCGATCCCGGTCGTTTCTTG 65490 Query 222188 CCACCCTGATC 222198 || || ||||| Sbjct 65491 CCGCCTTGATC 65501 >seq1 Length=243087 Score = 114 bits (126), Expect = 2e-20 Identities = 326/491 (66%), Gaps = 15/491 (3%) Strand=Plus/Plus Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGG 221773 |||| ||||||||| || | |||| || | ||| |||| || || || | || ||| Sbjct 194490 GCCAAGTTACACACCGCTATTTCGTTCTCCTCGGTGTACTCCATTATTTCCGAGCATAGG 194549 Query 221774 TTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTG 221833 |||||||| ||||| || || ||||| || ||||| | | | ||| || | || ||| Sbjct 194550 TTGCTGCATTTGATCGTGCCAAGGTGCTTCTGATTGTTCATCCTATTCGCTGAATCTTTG 194609 Query 221834 TAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCT 221893 ||| ||| | || ||||||||| | |||| |||||| | ||| | | | Sbjct 194610 TAGCACATGTACGGCGTGCCAGTCTCGATCTGACTGCTCAGAATAGCCTTCCACAACT-T 194668 Query 221894 CTG-GCGCTCACCGTCCTCTTGACTGCACCCT--CGGTCTTTTCATACCCGGTATAGAGC 221950 ||| || | ||| |||| | || || | | ||||||| ||| || | Sbjct 194669 CTGTGCACGCACGGTCCGCC-----GCGCCATGCCATTCTTTTCGTACATCTCGTACGCC 194723 Query 221951 ATGTCAAACTTTTCACCGTACGCCTCGTCCAGGC-CTGGACACC-TGGCGGGACACATCA 222008 ||||||||| || |||||| | || |||| | ||||| | | | ||| | || Sbjct 194724 TTGTCAAACTCATCTCCGTACAGATTGTACAGGTTCGGGACATCATCGTTGGAGAA--CA 194781 Query 222009 GACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGC-C 222067 | ||||| || | || | |||||| ||||||| || || || ||||||||||| Sbjct 194782 GCGACCAGTTCTCATCGTTGTGCACCCTCCGCATGAACAGATCAGGTATCCACAGCGCTG 194841 Query 222068 TGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAAC 222127 ||||| | ||| | | ||| ||||||| || |||| || | | ||| | ||| Sbjct 194842 TGAAA-ATATCGCGTGCACGCAGCTCCTCTTTACCCGTGTTCTTGCGTATATCAAGGAAC 194900 Query 222128 TCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTG 222187 ||||| || || | |||||||||||| | |||| |||| | || ||||| || ||| Sbjct 194901 TCAAAGATATCGGAGTGCCACGGCTCGACGTAGATCGCCATCGATCCCGGTCGTTTCTTG 194960 Query 222188 CCACCCTGATC 222198 || || ||||| Sbjct 194961 CCGCCTTGATC 194971 >seq5 Length=183138 Score = 109 bits (120), Expect = 1e-18 Identities = 205/299 (69%), Gaps = 2/299 (1%) Strand=Plus/Plus Query 25465 ACACACAAAGATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAA 25524 ||| || | ||| ||||| |||||||||| |||| | ||| |||||| | ||| Sbjct 59350 ACAAACCAGGATGTATGGCAGATGTACAAACAGGCATTATCATCATTCTGGACAGTGGAA 59409 Query 25525 GAGATTGATCTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCAT 25584 || ||||||| | ||||| || || | ||| || | | ||| |||| ||| Sbjct 59410 GAAGTTGATCTATCAAAGGATATTGATGATTGGAACCGGTTGAACGGAGATGAGCGCCAT 59469 Query 25585 TTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTG 25644 ||| | ||||||| | ||||||||||| || || || ||||| |||||||||||||| Sbjct 59470 TTTATATCGTACGTGCTCGCATTCTTTGCTGCATCGGACGGTATCGTGAACGAGAATCTC 59529 Query 25645 TGCGAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAG 25704 | |||| ||| | | || |||||| | ||||| || || ||||| || ||| Sbjct 59530 TTGGAGAACTTCTCGCGCGAGGTGCAGCTCAAAGAGGCGCGCTGCTTTTACGGCTTTCAG 59589 Query 25705 ATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCT-GATGACGTACATTA 25762 || ||||| || |||||| ||| |||| | ||| | ||| |||||||||| Sbjct 59590 ATTATGATCGAGAACGTGCACAGTGAAATGTACTCGTTGCTGATCGAT-ACGTACATTA 59647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928840399597760