Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vavraia_20culicis_20subsp._20floridensis_20[genbank_20GCA_5F00019279 5.1_202011-03-22] 379 sequences; 6,118,689 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq57 105 4e-17 >seq57 Length=32437 Score = 105 bits (116), Expect = 4e-17 Identities = 154/215 (72%), Gaps = 12/215 (6%) Strand=Plus/Plus Query 480561 AGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCT 480620 || |||||||| | ||||| || || | || |||||| ||| | | ||| Sbjct 25906 AGCACAAGATGCAACGTACTCTCCTTCTGTATGTTGTAATCACTCAGACTACGTCCATCC 25965 Query 480621 TCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCT 480680 ||||| ||||| || ||||||||||| || || || ||||||||||| || |||||||| Sbjct 25966 TCAAGCTGCTTGCCCGCAAAAATAAGCCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCC 26025 Query 480681 TGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAG------TTTCAAGGGTA 480734 | ||| || | ||| ||| | | | |||| |||| ||||| ||||| ||| Sbjct 26026 TTAATTTTATTTTTTACA---TTACT--TATC-GTGTCTGAAGGCTCGACCTCAAGCGTA 26079 Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||| ||||| ||||||||||| ||||| Sbjct 26080 ATGGTCTTACCCGTGAGTGTCTTAACGAATATTTG 26114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268162942851092