Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vavraia_20culicis_20subsp._20floridensis_20[genbank_20GCA_5F00019279 5.1_202011-03-22] 379 sequences; 6,118,689 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq13 158 2e-33 seq57 143 4e-29 >seq13 Length=120561 Score = 158 bits (174), Expect = 2e-33 Identities = 182/243 (75%), Gaps = 4/243 (2%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || || || ||||| || || || || || || || || ||||| |||||||| Sbjct 71965 ATGCAGATATTCGTAAAAACACTCACAGGCAAGACAATAACACTTGAGGTGGAGTCGTCC 71906 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || | || || ||||| || || ||||| || || |||||||||||| Sbjct 71905 GACACCATCGAGAATGTAAAGGCGAAGATACAGGACAAGGAGGGGATACCACCCGATCAG 71846 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 |||||||| || ||||| || || |||||||| |||||||| || || || || || Sbjct 71845 CAACGACTCATATTTGCGGGCAAGCAGCTTGAGGATGGACGGACGCTGAGCGACTATAAT 71786 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGTGCAACCGACGAA 172101 | || |||||| || || ||| | || || ||||| ||||||| |||| || ||| Sbjct 71785 ATACAGAAGGAGAGCACGCTGCACTTGGTGCTCAGGCTGCGGGGTG--GCAA--GAAGAA 71730 Query 172102 GAA 172104 ||| Sbjct 71729 GAA 71727 >seq57 Length=32437 Score = 143 bits (158), Expect = 4e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| || || || || || || || || || || || || ||||| ||| | ||| Sbjct 26117 ATGCAAATATTCGTTAAGACACTCACGGGTAAGACCATTACGCTTGAGGTCGAGCCTTCA 26058 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || ||| | ||| || ||| | || ||||| |||||||| || || ||| Sbjct 26057 GACACGATAAGTAATGTAAAAAATAAAATTAAGGACAAGGAGGGCATTCCTCCTGACCAG 25998 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || ||||||||||| || || |||||||| |||||||||| || |||||||||| Sbjct 25997 CAGCGGCTTATTTTTGCGGGCAAGCAGCTTGAGGATGGACGTAGTCTGAGTGATTACAAC 25938 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | || |||||| ||| | || ||||| || ||||| |||| || Sbjct 25937 ATACAGAAGGAGAGTACGTTGCATCTTGTGCTTAGGCTGAGGGGAGG 25891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657859283376880