Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vavraia_20culicis_20subsp._20floridensis_20[genbank_20GCA_5F00019279 5.1_202011-03-22] 379 sequences; 6,118,689 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq5 118 2e-21 >seq5 Length=183138 Score = 118 bits (130), Expect = 2e-21 Identities = 467/727 (64%), Gaps = 17/727 (2%) Strand=Plus/Minus Query 17983 TAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGTAG 18042 || || ||| || || ||||| | || || ||||||| | ||| |||||||| | || Sbjct 60087 TATTCCATCCGCAACGAATTCAATGTACTGGCACATCAACTTGCAGTTCATACCGATCAG 60028 Query 18043 TCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTAT 18102 | | ||| | || ||| | ||| |||| || || || || | ||| || | || Sbjct 60027 TGACACAGGCAAAGAGTCAGAGACAAACTCTTCTTCAATTTCCACTGCCTCCTTCACAAT 59968 Query 18103 GTTTATTACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAATAAACACGC 18162 | || |||| | |||||| ||| || | | | || |||| || || || Sbjct 59967 CTCTAATACCTTTTCTTTTGGGCATTGGCCGATGA-GCGTTTTGTTCATAAGAA-CA-GC 59911 Query 18163 AAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGG 18222 ||| | | || | || || || | ||||| || |||||| || || | ||||| Sbjct 59910 AAATTGATAATGCAGGCCCTCGTCACGTGATATCAACTCGTTAGAGAATGTAAGACCGGG 59851 Query 18223 CATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACC 18282 ||| | ||| | |||||| ||||| || || |||||||| | | |||||| | || Sbjct 59850 CATAAGACCGCGTTTTTTCAGCCAGAAGATAGATGCGAACGATCCACTAAAGAACAGCCC 59791 Query 18283 CTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAA-CTGTATTTATTGCTCAGT-ATC 18340 |||||| ||||| ||||| || | | | |||||| | | || | | ||| | ||| Sbjct 59790 CTCAACACACGCAAACGCAATAACACGTGTTGCAAAATCAGAATCTTTA--TCATTTATC 59733 Query 18341 CATTTTTGTGCCCATTCT-CCTTNNNNNNNNATACACGGTATAC----TCTCTATAGCAT 18395 ||||| ||| || |||| | ||| |||| | | || |||| Sbjct 59732 CATTTAAAGCACCACTCAGCCTTTCTC-----TTCACCGTATTGATGTTGGCAATCGCAT 59678 Query 18396 TAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACA 18455 | || | | || || |||| ||| || || || || ||||| | ||| || |||| Sbjct 59677 TGAAAAGAAAGTCCTTCTCTTCCTGATCCTTAATGTACGTATCGATCAGCAACGAGTACA 59618 Query 18456 TTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGAT 18515 ||||| || | | | || || |||||||| | ||||| | | ||||| Sbjct 59617 TTTCACTGTGCACGTTCTCGATCATAATCTGAAAGCCGTAAAAGCAGCGCGCCTCTTTGA 59558 Query 18516 ATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATG 18575 || | ||||| | || | || | | |||||| || || |||||||| | | | Sbjct 59557 GCTGCACCTCGCGCGAGAAGTTCTCCAAGAGATTCTCGTTCACGATACCGTCCGATGCAG 59498 Query 18576 CGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCATT 18635 | || ||||| | || || || ||||| |||| | || | |||||| | Sbjct 59497 CAAAGAATGCGAGCACGTACGATATAAAATGGCGCTCATCTCCGTTCAACCGGTTCCAAT 59438 Query 18636 CATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTT 18695 |||| ||||| ||||||||||||||||||||| |||||| || |||||| ||||||| Sbjct 59437 CATCAATATCCTTTGATAGATCAACTTCTTCCACTGTCCAGAATGATGATAATGCCTGTT 59378 Query 18696 TGTACAT 18702 ||||||| Sbjct 59377 TGTACAT 59371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731868532756400