Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vavraia_20culicis_20subsp._20floridensis_20[genbank_20GCA_5F00019279
5.1_202011-03-22] 379 sequences; 6,118,689 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq5 118 2e-21
>seq5
Length=183138
Score = 118 bits (130), Expect = 2e-21
Identities = 467/727 (64%), Gaps = 17/727 (2%)
Strand=Plus/Minus
Query 17983 TAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGTAG 18042
|| || ||| || || ||||| | || || ||||||| | ||| |||||||| | ||
Sbjct 60087 TATTCCATCCGCAACGAATTCAATGTACTGGCACATCAACTTGCAGTTCATACCGATCAG 60028
Query 18043 TCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTAT 18102
| | ||| | || ||| | ||| |||| || || || || | ||| || | ||
Sbjct 60027 TGACACAGGCAAAGAGTCAGAGACAAACTCTTCTTCAATTTCCACTGCCTCCTTCACAAT 59968
Query 18103 GTTTATTACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAATAAACACGC 18162
| || |||| | |||||| ||| || | | | || |||| || || ||
Sbjct 59967 CTCTAATACCTTTTCTTTTGGGCATTGGCCGATGA-GCGTTTTGTTCATAAGAA-CA-GC 59911
Query 18163 AAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGG 18222
||| | | || | || || || | ||||| || |||||| || || | |||||
Sbjct 59910 AAATTGATAATGCAGGCCCTCGTCACGTGATATCAACTCGTTAGAGAATGTAAGACCGGG 59851
Query 18223 CATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACC 18282
||| | ||| | |||||| ||||| || || |||||||| | | |||||| | ||
Sbjct 59850 CATAAGACCGCGTTTTTTCAGCCAGAAGATAGATGCGAACGATCCACTAAAGAACAGCCC 59791
Query 18283 CTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAA-CTGTATTTATTGCTCAGT-ATC 18340
|||||| ||||| ||||| || | | | |||||| | | || | | ||| | |||
Sbjct 59790 CTCAACACACGCAAACGCAATAACACGTGTTGCAAAATCAGAATCTTTA--TCATTTATC 59733
Query 18341 CATTTTTGTGCCCATTCT-CCTTNNNNNNNNATACACGGTATAC----TCTCTATAGCAT 18395
||||| ||| || |||| | ||| |||| | | || ||||
Sbjct 59732 CATTTAAAGCACCACTCAGCCTTTCTC-----TTCACCGTATTGATGTTGGCAATCGCAT 59678
Query 18396 TAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACA 18455
| || | | || || |||| ||| || || || || ||||| | ||| || ||||
Sbjct 59677 TGAAAAGAAAGTCCTTCTCTTCCTGATCCTTAATGTACGTATCGATCAGCAACGAGTACA 59618
Query 18456 TTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGAT 18515
||||| || | | | || || |||||||| | ||||| | | |||||
Sbjct 59617 TTTCACTGTGCACGTTCTCGATCATAATCTGAAAGCCGTAAAAGCAGCGCGCCTCTTTGA 59558
Query 18516 ATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATG 18575
|| | ||||| | || | || | | |||||| || || |||||||| | | |
Sbjct 59557 GCTGCACCTCGCGCGAGAAGTTCTCCAAGAGATTCTCGTTCACGATACCGTCCGATGCAG 59498
Query 18576 CGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCATT 18635
| || ||||| | || || || ||||| |||| | || | |||||| |
Sbjct 59497 CAAAGAATGCGAGCACGTACGATATAAAATGGCGCTCATCTCCGTTCAACCGGTTCCAAT 59438
Query 18636 CATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTT 18695
|||| ||||| ||||||||||||||||||||| |||||| || |||||| |||||||
Sbjct 59437 CATCAATATCCTTTGATAGATCAACTTCTTCCACTGTCCAGAATGATGATAATGCCTGTT 59378
Query 18696 TGTACAT 18702
|||||||
Sbjct 59377 TGTACAT 59371
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731868532756400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |