Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vavraia_20culicis_20subsp._20floridensis_20[genbank_20GCA_5F00019279 5.1_202011-03-22] 379 sequences; 6,118,689 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq13 98.7 8e-16 seq57 86.0 5e-12 >seq13 Length=120561 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 |||||||| || |||||| || || || || ||||| || | || || ||| Sbjct 71754 AGCACCAAGTGCAGCGTGCTCTCCTTCTGTATATTATAGTCGCTCAGCGTCCGTCCATCC 71813 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || || || ||||| ||| |||| | || ||||||||| || || || ||||| ||||| Sbjct 71814 TCAAGCTGCTTGCCCGCAAATATGAGTCGTTGCTGATCGGGTGGTATCCCCTCCTTGTCC 71873 Query 29695 TGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTT 29754 |||| || || ||| | || | ||||| || || || ||||| ||||| || Sbjct 71874 TGTATCTTCGCCTTTACATTCTCGATGGTGTCGGACGACTCCACCTCAAGTGTTATTGTC 71933 Query 29755 TTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || | ||||| || ||||||||||| Sbjct 71934 TTGCCTGTGAGTGTTTTTACGAATATCTGCAT 71965 >seq57 Length=32437 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 29558 GTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG 29617 |||||||||||| | ||||| | ||| | ||| || || || ||||| ||||| Sbjct 25889 GTCCTCCCCTCAGCCTAAGCACAAGATGCAACGTACTCTCCTTCTGTATGTTGTAATCAC 25948 Query 29618 CAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCG 29677 | | || ||| || || || ||||| ||| | || | | ||||| || || | Sbjct 25949 TCAGACTACGTCCATCCTCAAGCTGCTTGCCCGCAAAAATAAGCCGCTGCTGGTCAGGAG 26008 Query 29678 GAATACCCTCTTTGTCTTGTAATTTT-TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCT 29736 |||| ||||| ||||| | ||||||| | ||| ||| | || ||||| ||| | || Sbjct 26009 GAATGCCCTCCTTGTCCT-TAATTTTATTTTTTACATTACTTATCGTGTCTGAAGGCTCG 26067 Query 29737 ACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || ||||| || || || || || || | || ||||| ||||| |||||| Sbjct 26068 ACCTCAAGCGTAATGGTCTTACCCGTGAGTGTCTTAACGAATATTTGCATT 26118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385217420648439