Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vavraia_20culicis_20subsp._20floridensis_20[genbank_20GCA_5F00019279 5.1_202011-03-22] 379 sequences; 6,118,689 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq13 118 1e-21 seq57 98.7 1e-15 >seq13 Length=120561 Score = 118 bits (130), Expect = 1e-21 Identities = 146/197 (74%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 133469 CTCTTTCTGTATATTGTAATCGCCCATCGT-GGACGAGTCCTCGAGCTGCTTGCCCGCGT 133527 ||| ||||||||||| || |||| || ||| | | | ||||| |||||||||||||| Sbjct 71774 CTCCTTCTGTATATTATAGTCGCTCAGCGTCCGTCCA-TCCTCAAGCTGCTTGCCCGCAA 71832 Query 133528 AAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCT 133587 | ||||| || ||||| ||||| || || || |||||||| ||||| ||| | | Sbjct 71833 ATATGAGTCGTTGCTGATCGGGTGGTATCCCCTCCTTGTCCTGTATCTTCGCCTTTACAT 71892 Query 133588 GCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTA 133647 ||| | ||||||| | |||||| || | || | || ||||| || || ||||||| Sbjct 71893 TCTCGATGGTGTCGGACGACTCCACCTCAAGTGTTATTGTCTTGCCTGTGAGTGTTTTTA 71952 Query 133648 CGAAAATCTGCATGGCT 133664 |||| |||||||| ||| Sbjct 71953 CGAATATCTGCATCGCT 71969 >seq57 Length=32437 Score = 98.7 bits (108), Expect = 1e-15 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 133469 CTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGT 133527 ||| |||||||| |||||||| | || | | | | ||||| |||||||||||||| Sbjct 25926 CTCCTTCTGTATGTTGTAATCACTCAGACTACGTCCA-TCCTCAAGCTGCTTGCCCGCAA 25984 Query 133528 AAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCT 133587 |||| |||||||||||||| ||||| ||||| |||||||| | || || | || | | Sbjct 25985 AAATAAGCCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTTAATTTTATTTTTTACAT 26044 Query 133588 GCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTA 133647 | |||||| | ||||| || || | || | ||| || || || || || || | Sbjct 26045 TACTTATCGTGTCTGAAGGCTCGACCTCAAGCGTAATGGTCTTACCCGTGAGTGTCTTAA 26104 Query 133648 CGAAAATCTGCAT 133660 |||| || ||||| Sbjct 26105 CGAATATTTGCAT 26117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483418509793960