Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vavraia_20culicis_20subsp._20floridensis_20[genbank_20GCA_5F00019279 5.1_202011-03-22] 379 sequences; 6,118,689 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq57 122 8e-23 seq13 111 1e-19 >seq57 Length=32437 Score = 122 bits (134), Expect = 8e-23 Identities = 157/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 35521 CCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTC 35580 ||| | ||| | ||| |||||||||||||| || ||||||||||| || | || | Sbjct 25902 CCTAAGCACAAGATGCAACGTACTCTCCTTCTGTATGTTGTAATCACTCAGACTACGTCC 25961 Query 35581 GTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTT 35640 || || |||||||| |||||||| || | |||||||||||| | ||||| || |||||| Sbjct 25962 ATCCTCAAGCTGCTTGCCCGCAAAAATAAGCCGCTGCTGGTCAGGAGGAATGCCCTCCTT 26021 Query 35641 GTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGAT 35700 |||| | || || | || | | | | |||||| | || ||||| | ||| || Sbjct 26022 GTCCTTAATTTTATTTTTTACATTACTTATCGTGTCTGAAGGCTCGACCTCAAGCGTAAT 26081 Query 35701 CGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATT 35737 || |||||||| | || || || ||||| |||||| Sbjct 26082 GGTCTTACCCGTGAGTGTCTTAACGAATATTTGCATT 26118 >seq13 Length=120561 Score = 111 bits (122), Expect = 1e-19 Identities = 169/241 (70%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 35496 TCATCTCTTTATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAA 35555 || ||| || || ||||| || | ||| | |||||| || | ||| |||||||| || | Sbjct 71725 TCTTCTTCTTCTTGCCACCCCGCAGCCTGAGCACCAAGTGCAGCGTGCTCTCCTTCTGTA 71784 Query 35556 TGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCT 35615 | || || ||| || || || | || || |||||||| ||||||||||| | || | Sbjct 71785 TATTATAGTCGCTCAGCGTCCGTCCATCCTCAAGCTGCTTGCCCGCAAATATGAGTCGTT 71844 Query 35616 GCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGT 35675 |||| || | || | | |||||||||| ||||| ||| | | | | | |||| Sbjct 71845 GCTGATCGGGTGGTATCCCCTCCTTGTCCTGTATCTTCGCCTTTACATTCTCGATGGTGT 71904 Query 35676 CGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCA 35735 || ||| |||||||| | || || || || || || | ||||| || |||||||||| Sbjct 71905 CGGACGACTCCACCTCAAGTGTTATTGTCTTGCCTGTGAGTGTTTTTACGAATATCTGCA 71964 Query 35736 T 35736 | Sbjct 71965 T 71965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450791464365320