Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vavraia_20culicis_20subsp._20floridensis_20[genbank_20GCA_5F00019279 5.1_202011-03-22] 379 sequences; 6,118,689 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq5 127 2e-24 >seq5 Length=183138 Score = 127 bits (140), Expect = 2e-24 Identities = 364/555 (66%), Gaps = 11/555 (2%) Strand=Plus/Plus Query 43731 TATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGA 43790 ||||||| ||||||||| | ||| | ||||| ||||||| |||||||||||| | Sbjct 59363 TATGGCAGATGTACAAACAGGCATTATCATCATTCTGGACAGTGGAAGAAGTTGATCTAT 59422 Query 43791 CTAAAGACTTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGG 43850 | || || | | |||||| || || | | || ||||||||||| | | Sbjct 59423 CAAAGGATATTGATGATTGGAACCGGTTGAACGGAGATGAGCGCCATTTTATATCGTACG 59482 Query 43851 TTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAAT---TTGGTTAGTCGGT 43907 | | || || |||||||| ||||| || || || || ||| |||| | | Sbjct 59483 TGCTCGCATTCTTTGCTGCATCGGACGGTATCGTGAACGAGAATCTCTTGGAGAAC---T 59539 Query 43908 TTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAG 43967 | ||| || || || | ||| || || || ||||| || ||||| ||| || | Sbjct 59540 TCTCGCGCGAGGTGCAGCTCAAAGAGGCGCGCTGCTTTTACGGCTTTCAGATTATGATCG 59599 Query 43968 AAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACG 44027 | || | || ||||||||| | ||||| ||||||||||| || ||| | | | Sbjct 59600 AGAACGTGCACAGTGAAATGTACTCGTTGCTGATCGATACGTACATTAAGGATCAGGAAG 59659 Query 44028 AGAAGCATCGATTGTTTAATGCGATAG-AAACAGTACCTGCGATTAAACATAAAGCAGAC 44086 ||||| | | || |||||||| | |||| | | || | || || || || Sbjct 59660 AGAAGGACTTTCTTTTCAATGCGATTGCCAACA-TCAATACGGTGAAGAGAAAGGCTGAG 59718 Query 44087 TGGGCCCTTAAATGGATAAATTCAAATGATTC---TTTTGGAGAACGACTTGTCGCGTTT 44143 ||| | |||||||||||||| || ||||| ||||| | ||| || | |||||| Sbjct 59719 TGGTGCTTTAAATGGATAAATGATAAAGATTCTGATTTTGCAACACGTGTTATTGCGTTT 59778 Query 44144 GCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAA 44203 || ||| || || | |||||| |||||||| || | || || ||| | || ||| Sbjct 59779 GCGTGTGTTGAGGGGCTGTTCTTTAGTGGATCGTTCGCATCTATCTTCTGGCTGAAAAAA 59838 Query 44204 CGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTA 44263 || ||| | ||||| || | || || || || ||||| ||| ||||| || ||| | Sbjct 59839 CGCGGTCTTATGCCCGGTCTTACATTCTCTAACGAGTTGATATCACGTGACGAGGGCCTG 59898 Query 44264 CATTGCGATTTTGCT 44278 |||| | |||||| Sbjct 59899 CATTATCAATTTGCT 59913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397454164125895