Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vavraia_20culicis_20subsp._20floridensis_20[genbank_20GCA_5F00019279 5.1_202011-03-22] 379 sequences; 6,118,689 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq16 138 1e-27 seq1 138 1e-27 seq10 86.0 8e-12 >seq16 Length=116485 Score = 138 bits (152), Expect = 1e-27 Identities = 609/945 (64%), Gaps = 28/945 (3%) Strand=Plus/Plus Query 117958 GTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCCTGT 118017 || ||| || || |||| |||||||| | |||||| | |||||| | ||| | | Sbjct 64265 GTGCCCTGTCAGCTGCCAGATCAATCAAACTACGCATCTTCAGCTCCCACGCTGTCTTAT 64324 Query 118018 AGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCTTGA 118077 | || |||| || || || || ||| || | || |||| || ||| | ||| | Sbjct 64325 AAAGCCTCTTTATCTCGTCCGGTATACCCTCAATTCTTTGAATACTTCCCTCTTCCTGTA 64384 Query 118078 CCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGAT 118137 || || | |||||| || | ||| ||| | ||| | || || | || || | Sbjct 64385 TCAGGATGTTCTTCATCTCATCGCTCCATAGATTGAGCTTCATCAGGTCGTGCATCAGGT 64444 Query 118138 GCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGT 118197 | | ||||| || ||||||||||| || ||||| | | ||| ||||| || ||| Sbjct 64445 ACGTGTTGACCACCTGGAACTCACCCGCAAGCGTGCGGCGCGTATAAATATTCGTGGTGA 64504 Query 118198 ATGGCTCAAAGCACTCATTGTTACCCAAG-ATTTGGGCTGTGGAGGCTGTGGGCATGGGT 118256 | |||||||||||||| |||| |||| || || || | ||| || |||||||| || Sbjct 64505 AGGGCTCAAAGCACTCGTTGT-ACCCGAGTATCTGAGAGGTGCTTGCAGTGGGCATTAGT 64563 Query 118257 GCCATGAGAAGGCTGTTACGGAGACCCTT-TTCCCTAATGCGTTCCTTGAGAGCGTCCCA 118315 || | || | | || | | ||| | ||| ||| | | | |||| | ||| Sbjct 64564 GCAACAAGCAAGGAATTCCTCACACCATACTTCGCTA-TCCTGGCACGGAGACCCCGCCA 64622 Query 118316 GTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGC 118375 || | ||| | | | || | | |||||||||||| || || | || || | Sbjct 64623 ATCATGGTTTGTCACAGGCACCACGTTCCACATATCAAAATGCAGCACGCCCTGACTCAT 64682 Query 118376 TGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTC 118435 || ||| ||| | | ||||| || || | ||| ||| | || ||||||| || Sbjct 64683 CGGGCTTCCTTCATAGCTGTCATACGGCCCATACTCCTTCGCAAGCTCACAGCTCGCATC 64742 Query 118436 GAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGA 118495 || ||||| || || |||||||| ||||| ||| | || ||||| | || Sbjct 64743 AAGTGCTGCAAAATGAATCGTTTCAAATATGCGCAAATTTACGGCACGCGCCTCCTTTGA 64802 Query 118496 ATCAAACGCGAGTCGGCA-CAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAA 118554 |||| ||| | || || || | ||| ||||| || || || || || || ||||| | Sbjct 64803 ATCATACGGCA-TCCTCAGCATCACAAAAACATCAGCAAGGCCCTGCACTCCAAGGCCGA 64861 Query 118555 TTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCC---ACGGGATAAAAATTCCTAT 118611 | || |||||| | | |||| |||| | |||| | ||||| ||||| | Sbjct 64862 TGGGACGATGTTTGAGATTACTGTTCCTTG---TCTCGGGTAGAGGATACAAATTTACGT 64918 Query 118612 CGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGA---TTTCATGAAGCTTTTCGT 118668 | || || | || || || || ||||| ||| |||| ||| ||| |||| || | Sbjct 64919 CTATCACTTTGTTGAGGTTCTTTACGACAATCTTGGTGACCATTT--TGA-GCTTCTCAT 64975 Query 118669 AATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTAC 118728 | ||||| ||| |||| | ||| || || | || | | ||| || |||| |||| Sbjct 64976 AGTCAAA-CTGGCCGTCT-TGCAT-GA---ACCTGGGCAAGCCGAGGGATGCCAAGTTAC 65029 Query 118729 ACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCT 118788 |||| | | || | || || |||||||| || ||||||| ||| | ||| | | Sbjct 65030 ACACCGCTATTTCGTTCTCCTCGGTGTACTCCATTATTTCCGAGCATAGGTTGCTGCATT 65089 Query 118789 TAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGT 118848 | || ||||| | || ||| ||||| | | | || | ||| ||||| ||||| Sbjct 65090 TGATCGTGCCAAGGTGCTTCTGATTGTTCATCCTATTCGCTGAATCTTTGTAGCACATGT 65149 Query 118849 ATGGCGTCCCCGTCTCCGTTTGGGACT--TGAGAATAGCCTTCCA 118891 | ||||| || ||||| | || ||| | |||||||||||||| Sbjct 65150 ACGGCGTGCCAGTCTCGATCTG--ACTGCTCAGAATAGCCTTCCA 65192 >seq1 Length=243087 Score = 138 bits (152), Expect = 1e-27 Identities = 609/945 (64%), Gaps = 28/945 (3%) Strand=Plus/Plus Query 117958 GTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCCTGT 118017 || ||| || || |||| |||||||| | |||||| | |||||| | ||| | | Sbjct 193735 GTGCCCTGTCAGCTGCCAGATCAATCAAACTACGCATCTTCAGCTCCCACGCTGTCTTAT 193794 Query 118018 AGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCTTGA 118077 | || |||| || || || || ||| || | || |||| || ||| | ||| | Sbjct 193795 AAAGCCTCTTTATCTCGTCCGGTATACCCTCAATTCTTTGAATACTTCCCTCTTCCTGTA 193854 Query 118078 CCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGAT 118137 || || | |||||| || | ||| ||| | ||| | || || | || || | Sbjct 193855 TCAGGATGTTCTTCATCTCATCGCTCCATAGATTGAGCTTCATCAGGTCGTGCATCAGGT 193914 Query 118138 GCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGT 118197 | | ||||| || ||||||||||| || ||||| | | ||| ||||| || ||| Sbjct 193915 ACGTGTTGACCACCTGGAACTCACCCGCAAGCGTGCGGCGCGTATAAATATTCGTGGTGA 193974 Query 118198 ATGGCTCAAAGCACTCATTGTTACCCAAG-ATTTGGGCTGTGGAGGCTGTGGGCATGGGT 118256 | |||||||||||||| |||| |||| || || || | ||| || |||||||| || Sbjct 193975 AGGGCTCAAAGCACTCGTTGT-ACCCGAGTATCTGAGAGGTGCTTGCAGTGGGCATTAGT 194033 Query 118257 GCCATGAGAAGGCTGTTACGGAGACCCTT-TTCCCTAATGCGTTCCTTGAGAGCGTCCCA 118315 || | || | | || | | ||| | ||| ||| | | | |||| | ||| Sbjct 194034 GCAACAAGCAAGGAATTCCTCACACCATACTTCGCTA-TCCTGGCACGGAGACCCCGCCA 194092 Query 118316 GTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGC 118375 || | ||| | | | || | | |||||||||||| || || | || || | Sbjct 194093 ATCATGGTTTGTCACAGGCACCACGTTCCACATATCAAAATGCAGCACGCCCTGACTCAT 194152 Query 118376 TGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTC 118435 || ||| ||| | | ||||| || || | ||| ||| | || ||||||| || Sbjct 194153 CGGGCTTCCTTCATAGCTGTCATACGGCCCATACTCCTTCGCAAGCTCACAGCTCGCATC 194212 Query 118436 GAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGA 118495 || ||||| || || |||||||| ||||| ||| | || ||||| | || Sbjct 194213 AAGTGCTGCAAAATGAATCGTTTCAAATATGCGCAAATTTACGGCACGCGCCTCCTTTGA 194272 Query 118496 ATCAAACGCGAGTCGGCA-CAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAA 118554 |||| ||| | || || || | ||| ||||| || || || || || || ||||| | Sbjct 194273 ATCATACGGCA-TCCTCAGCATCACAAAAACATCAGCAAGGCCCTGCACTCCAAGGCCGA 194331 Query 118555 TTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCC---ACGGGATAAAAATTCCTAT 118611 | || |||||| | | |||| |||| | |||| | ||||| ||||| | Sbjct 194332 TGGGACGATGTTTGAGATTACTGTTCCTTG---TCTCGGGTAGAGGATACAAATTTACGT 194388 Query 118612 CGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGA---TTTCATGAAGCTTTTCGT 118668 | || || | || || || || ||||| ||| |||| ||| ||| |||| || | Sbjct 194389 CTATCACTTTGTTGAGGTTCTTTACGACAATCTTGGTGACCATTT--TGA-GCTTCTCAT 194445 Query 118669 AATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTAC 118728 | ||||| ||| |||| | ||| || || | || | | ||| || |||| |||| Sbjct 194446 AGTCAAA-CTGGCCGTCT-TGCAT-GA---ACCTGGGCAAGCCGAGGGATGCCAAGTTAC 194499 Query 118729 ACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCT 118788 |||| | | || | || || |||||||| || ||||||| ||| | ||| | | Sbjct 194500 ACACCGCTATTTCGTTCTCCTCGGTGTACTCCATTATTTCCGAGCATAGGTTGCTGCATT 194559 Query 118789 TAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGT 118848 | || ||||| | || ||| ||||| | | | || | ||| ||||| ||||| Sbjct 194560 TGATCGTGCCAAGGTGCTTCTGATTGTTCATCCTATTCGCTGAATCTTTGTAGCACATGT 194619 Query 118849 ATGGCGTCCCCGTCTCCGTTTGGGACT--TGAGAATAGCCTTCCA 118891 | ||||| || ||||| | || ||| | |||||||||||||| Sbjct 194620 ACGGCGTGCCAGTCTCGATCTG--ACTGCTCAGAATAGCCTTCCA 194662 >seq10 Length=142875 Score = 86.0 bits (94), Expect = 8e-12 Identities = 189/283 (67%), Gaps = 8/283 (3%) Strand=Plus/Minus Query 179032 AGTTTTGTGAAGATGTACCTCGTTTGAGACGCATCTTTGCCACCCATGAGACGCGTCCCA 179091 || ||||| || ||||| | | || ||||||||||||||| || ||||| || Sbjct 35076 AGATTTGTAAAAATGTAACGTGCGGAAGCCGCATCTTTGCCACCTTGCAGGCGCGTGCCG 35017 Query 179092 AATTGACCACATGGCTCAAGGAGATTGATATTGTTTGAACCCATGTAGTCATTGGCCAAC 179151 |||||||| ||| ||||| || |||| |||||| || | | |||| || | | Sbjct 35016 AATTGACCGGCTGGTTCAAGCAGGTTGACATTGTTGCTCCCAACAAAATCATGTGCAAGC 34957 Query 179152 TTGACAATCGTATCCGCGAGGGAGACT----TCACCGTGATGGTAAGCCGACTTGTCCGC 179207 |||| |||||| | | | | ||| || ||||| || || ||||| | || || Sbjct 34956 TTGATAATCGTCT----GCTGCAAACTCATCTCGCCGTGGTGATATGCCGAGTGCTCGGC 34901 Query 179208 CACATATGCCGCCAACTGCGCCACCTTCATCTCATCCTTGAGGTTCTTGTGGAAGCACGC 179267 ||||| || | | ||| || ||||| ||||| || || ||| | | ||||| Sbjct 34900 AACATAACCCACGAGCTGGGCAACCTTAATCTCGGATTTAAGATTCCTCTTAAAGCAACA 34841 Query 179268 ATACATCACCTTTCTTTGTGAAGGCTTGAGGCCGTCGGCCATG 179310 |||||||| |||| ||| |||||| | || || ||||| Sbjct 34840 GTACATCACTTTTCGCTGTCCAGGCTTAAAACCATCCACCATG 34798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618432270163240