Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vavraia_20culicis_20subsp._20floridensis_20[genbank_20GCA_5F00019279
5.1_202011-03-22] 379 sequences; 6,118,689 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq57 131 5e-25
seq13 125 2e-23
seq5 91.5 4e-13
>seq57
Length=32437
Score = 131 bits (144), Expect = 5e-25
Identities = 159/217 (73%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 140523 CTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCA 140582
|| || |||||||| | ||| ||| || || || || |||||| | | || |||
Sbjct 25903 CTAAGCACAAGATGCAACGTACTCTCCTTCTGTATGTTGTAATCACTCAGACTACGTCCA 25962
Query 140583 TCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTA 140642
|| ||||| || || || ||||| || || || ||||| ||||||||||| || || ||
Sbjct 25963 TCCTCAAGCTGCTTGCCCGCAAAAATAAGCCGCTGCTGGTCAGGAGGAATGCCCTCCTTG 26022
Query 140643 TCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACT 140702
|||| ||||||| |||||||||| |||| || || || || || ||||| ||||
Sbjct 26023 TCCTTAATTTTATTTTTTACATTACTTATCGTGTCTGAAGGCTCGACCTCAAGCGTAATG 26082
Query 140703 GTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATTA 140739
||||| || || ||||| || || || || |||||||
Sbjct 26083 GTCTTACCCGTGAGTGTCTTAACGAATATTTGCATTA 26119
>seq13
Length=120561
Score = 125 bits (138), Expect = 2e-23
Identities = 143/192 (74%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 140546 CTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAA 140605
||| || || |||||||| || | || || ||||| ||||| || || || |||||
Sbjct 71774 CTCCTTCTGTATATTATAGTCGCTCAGCGTCCGTCCATCCTCAAGCTGCTTGCCCGCAAA 71833
Query 140606 GATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATT 140665
|| || ||||||||||| || || || || || || ||||| || || || ||||||||
Sbjct 71834 TATGAGTCGTTGCTGATCGGGTGGTATCCCCTCCTTGTCCTGTATCTTCGCCTTTACATT 71893
Query 140666 ATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725
|| || | || || | || || |||||||| | |||||| || || |||||||||||
Sbjct 71894 CTCGATGGTGTCGGACGACTCCACCTCAAGTGTTATTGTCTTGCCTGTGAGTGTTTTTAC 71953
Query 140726 AAAAATCTGCAT 140737
|| ||||||||
Sbjct 71954 GAATATCTGCAT 71965
>seq5
Length=183138
Score = 91.5 bits (100), Expect = 4e-13
Identities = 150/215 (70%), Gaps = 6/215 (3%)
Strand=Plus/Minus
Query 223700 ACAGCAAATTCTGTATGTAATGCCTCATCTCTTGATATTAATTCATTTGAAAATGTTAAT 223759
|||||||||| ||| | |||| || | |||||| || || || || ||||| |
Sbjct 59915 ACAGCAAATTGATAATGCAGGCCCTCGTCACGTGATATCAACTCGTTAGAGAATGTAAGA 59856
Query 223760 CCAGGCATTAAACCTCTCTTTTTCATCCAAAATAT---TGCGCAAAAAGCTCCTGaaaaa 223816
|| ||||| | ||| | ||||||| ||| || || |||| || | ||| |||
Sbjct 59855 CCGGGCATAAGACCGCGTTTTTTCAGCCAGAAGATAGATGCG---AACGATCCACTAAAG 59799
Query 223817 aaTATACCTTCTACACAAGCAAACGCTACTAATCGTGTTGCAAAATTTGAATCTTTGTCT 223876
|| | || || ||||| |||||||| | | ||||||||||||| |||||||| ||
Sbjct 59798 AACAGCCCCTCAACACACGCAAACGCAATAACACGTGTTGCAAAATCAGAATCTTTATCA 59739
Query 223877 CCTATCCATTTTAATGCCCAATCTGCTTTTTTCTT 223911
||||||||| || ||| || || ||| ||||
Sbjct 59738 TTTATCCATTTAAAGCACCACTCAGCCTTTCTCTT 59704
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515247042019337
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |