Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vavraia_20culicis_20subsp._20floridensis_20[genbank_20GCA_5F00019279 5.1_202011-03-22] 379 sequences; 6,118,689 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq57 131 5e-25 seq13 125 2e-23 seq5 91.5 4e-13 >seq57 Length=32437 Score = 131 bits (144), Expect = 5e-25 Identities = 159/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 140523 CTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCA 140582 || || |||||||| | ||| ||| || || || || |||||| | | || ||| Sbjct 25903 CTAAGCACAAGATGCAACGTACTCTCCTTCTGTATGTTGTAATCACTCAGACTACGTCCA 25962 Query 140583 TCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTA 140642 || ||||| || || || ||||| || || || ||||| ||||||||||| || || || Sbjct 25963 TCCTCAAGCTGCTTGCCCGCAAAAATAAGCCGCTGCTGGTCAGGAGGAATGCCCTCCTTG 26022 Query 140643 TCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACT 140702 |||| ||||||| |||||||||| |||| || || || || || ||||| |||| Sbjct 26023 TCCTTAATTTTATTTTTTACATTACTTATCGTGTCTGAAGGCTCGACCTCAAGCGTAATG 26082 Query 140703 GTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATTA 140739 ||||| || || ||||| || || || || ||||||| Sbjct 26083 GTCTTACCCGTGAGTGTCTTAACGAATATTTGCATTA 26119 >seq13 Length=120561 Score = 125 bits (138), Expect = 2e-23 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 140546 CTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAA 140605 ||| || || |||||||| || | || || ||||| ||||| || || || ||||| Sbjct 71774 CTCCTTCTGTATATTATAGTCGCTCAGCGTCCGTCCATCCTCAAGCTGCTTGCCCGCAAA 71833 Query 140606 GATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATT 140665 || || ||||||||||| || || || || || || ||||| || || || |||||||| Sbjct 71834 TATGAGTCGTTGCTGATCGGGTGGTATCCCCTCCTTGTCCTGTATCTTCGCCTTTACATT 71893 Query 140666 ATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 || || | || || | || || |||||||| | |||||| || || ||||||||||| Sbjct 71894 CTCGATGGTGTCGGACGACTCCACCTCAAGTGTTATTGTCTTGCCTGTGAGTGTTTTTAC 71953 Query 140726 AAAAATCTGCAT 140737 || |||||||| Sbjct 71954 GAATATCTGCAT 71965 >seq5 Length=183138 Score = 91.5 bits (100), Expect = 4e-13 Identities = 150/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 223700 ACAGCAAATTCTGTATGTAATGCCTCATCTCTTGATATTAATTCATTTGAAAATGTTAAT 223759 |||||||||| ||| | |||| || | |||||| || || || || ||||| | Sbjct 59915 ACAGCAAATTGATAATGCAGGCCCTCGTCACGTGATATCAACTCGTTAGAGAATGTAAGA 59856 Query 223760 CCAGGCATTAAACCTCTCTTTTTCATCCAAAATAT---TGCGCAAAAAGCTCCTGaaaaa 223816 || ||||| | ||| | ||||||| ||| || || |||| || | ||| ||| Sbjct 59855 CCGGGCATAAGACCGCGTTTTTTCAGCCAGAAGATAGATGCG---AACGATCCACTAAAG 59799 Query 223817 aaTATACCTTCTACACAAGCAAACGCTACTAATCGTGTTGCAAAATTTGAATCTTTGTCT 223876 || | || || ||||| |||||||| | | ||||||||||||| |||||||| || Sbjct 59798 AACAGCCCCTCAACACACGCAAACGCAATAACACGTGTTGCAAAATCAGAATCTTTATCA 59739 Query 223877 CCTATCCATTTTAATGCCCAATCTGCTTTTTTCTT 223911 ||||||||| || ||| || || ||| |||| Sbjct 59738 TTTATCCATTTAAAGCACCACTCAGCCTTTCTCTT 59704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515247042019337