Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vavraia_20culicis_20subsp._20floridensis_20[genbank_20GCA_5F00019279 5.1_202011-03-22] 379 sequences; 6,118,689 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq5 96.9 4e-15 seq16 93.3 5e-14 seq1 93.3 5e-14 >seq5 Length=183138 Score = 96.9 bits (106), Expect = 4e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032 |||||| |||| | || || ||||| || || || || | ||||| ||| |||||| Sbjct 59755 TTTGCAACACGTGTTATTGCGTTTGCGTGTGTTGAGGGGCTGTTCTTTAGTGGATCGTTC 59814 Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092 |||| |||||||| ||||| || || || ||||| || || | ||||| |||||| Sbjct 59815 GCATCTATCTTCTGGCTGAAAAAACGCGGTCTTATGCCCGGTCTTACATTCTCTAACGAG 59874 Query 60093 CTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGT 60133 |||| || || ||||||||||| ||| | | ||||| || Sbjct 59875 TTGATATCACGTGACGAGGGCCTGCATTATCAATTTGCTGT 59915 >seq16 Length=116485 Score = 93.3 bits (102), Expect = 5e-14 Identities = 319/494 (65%), Gaps = 9/494 (2%) Strand=Plus/Minus Query 19472 GGCGGCAA---ACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTC 19528 |||||||| ||| ||| ||| | || |||||| ||||||| |||||| | || || Sbjct 65495 GGCGGCAAGAAACGACCGGGATCGATGGCGATCTACGTCGAGCCGTGGCACTCCGATATC 65436 Query 19529 ATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTC 19588 | || ||||| || | ||| |||| |||| | |||||| |||| ||||| | Sbjct 65435 TTTGAGTTCCTTGATATACGCAAGAACACGGGTAAAGAGGAGCTGCGTGCACGCGATATT 65376 Query 19589 TTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGG 19648 ||||| || ||||||| || || || |||||| || ||| | || || || | ||| Sbjct 65375 TTCACAGCGCTGTGGATACCTGATCTGTTCATGCGGAGGGTGCACAACGATGAGAACTGG 65316 Query 19649 CACCTGATGTGCCCGCACGA--ATGCCCTGG-CCTACCCGACGTCTACGGCGAGGCGTTC 19705 ||| | | | |||| ||| || | ||| | | | ||||| || | ||| Sbjct 65315 TCGCTGTTCTCCA---ACGATGATGTCCCGAACCTGTACAATCTGTACGGAGATGAGTTT 65259 Query 19706 AATGAGTTGTACCGGACTTACGTAGCCCAGGGCCGGTTCAAGAAGGTGGTCCGGGCCCGG 19765 | || |||| || |||| | | ||| | | | || || || | | Sbjct 65258 GACAAGGCGTACGAGATGTACGAAAAGAATGGCATGGCGCGGCGGACCGTGCGTGCACAG 65199 Query 19766 GACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACATGTGCTAC 19825 | | ||| | | || | || ||| ||||||| ||||| ||||||||||||||| Sbjct 65198 AAGTTGTGGAAGGCTATTCTGAGCAGTCAGATCGAGACTGGCACGCCGTACATGTGCTAC 65139 Query 19826 AAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCAAGTCGTCCAAC 19885 || || | ||||| | | ||||||||| || | ||| ||||||| | |||| Sbjct 65138 AAAGATTCAGCGAATAGGATGAACAATCAGAAGCACCTTGGCACGATCAAATGCAGCAAC 65079 Query 19886 CTGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTAATCTGGCG 19945 || || | ||||| |||||| || || | |||| | || |||||||| |||| Sbjct 65078 CTATGCTCGGAAATAATGGAGTACACCGAGGAGAACGAAATAGCGGTGTGTAACTTGGCA 65019 Query 19946 TCCCTGTGCCTGCC 19959 ||||| || |||| Sbjct 65018 TCCCTCGGCTTGCC 65005 Score = 84.2 bits (92), Expect = 2e-11 Identities = 127/180 (71%), Gaps = 3/180 (2%) Strand=Plus/Plus Query 79356 CCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAA 79415 ||||| ||| || || | ||| || |||||| || || || |||||||| || ||||| Sbjct 65316 CCAGTTCTCATCGTTGTGCACCCTCCGCATGAACAGATCAGGTATCCACAGCGCTGTGAA 65375 Query 79416 GAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCAT 79475 | ||||| ||||| |||||| | ||| |||| || | || || || || | Sbjct 65376 AATATCGCGTGCACGCAGCTCCTCTTTACCCGTGTTCTTGCGTATATCAAGGAACTCAAA 65435 Query 79476 GATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCG---CTTGCCGCC 79532 ||| |||| |||||||||||| | ||||| || | ||| ||| || ||||||||| Sbjct 65436 GATATCGGAGTGCCACGGCTCGACGTAGATCGCCATCGATCCCGGTCGTTTCTTGCCGCC 65495 >seq1 Length=243087 Score = 93.3 bits (102), Expect = 5e-14 Identities = 319/494 (65%), Gaps = 9/494 (2%) Strand=Plus/Minus Query 19472 GGCGGCAA---ACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTC 19528 |||||||| ||| ||| ||| | || |||||| ||||||| |||||| | || || Sbjct 194965 GGCGGCAAGAAACGACCGGGATCGATGGCGATCTACGTCGAGCCGTGGCACTCCGATATC 194906 Query 19529 ATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTC 19588 | || ||||| || | ||| |||| |||| | |||||| |||| ||||| | Sbjct 194905 TTTGAGTTCCTTGATATACGCAAGAACACGGGTAAAGAGGAGCTGCGTGCACGCGATATT 194846 Query 19589 TTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGG 19648 ||||| || ||||||| || || || |||||| || ||| | || || || | ||| Sbjct 194845 TTCACAGCGCTGTGGATACCTGATCTGTTCATGCGGAGGGTGCACAACGATGAGAACTGG 194786 Query 19649 CACCTGATGTGCCCGCACGA--ATGCCCTGG-CCTACCCGACGTCTACGGCGAGGCGTTC 19705 ||| | | | |||| ||| || | ||| | | | ||||| || | ||| Sbjct 194785 TCGCTGTTCTCCA---ACGATGATGTCCCGAACCTGTACAATCTGTACGGAGATGAGTTT 194729 Query 19706 AATGAGTTGTACCGGACTTACGTAGCCCAGGGCCGGTTCAAGAAGGTGGTCCGGGCCCGG 19765 | || |||| || |||| | | ||| | | | || || || | | Sbjct 194728 GACAAGGCGTACGAGATGTACGAAAAGAATGGCATGGCGCGGCGGACCGTGCGTGCACAG 194669 Query 19766 GACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACATGTGCTAC 19825 | | ||| | | || | || ||| ||||||| ||||| ||||||||||||||| Sbjct 194668 AAGTTGTGGAAGGCTATTCTGAGCAGTCAGATCGAGACTGGCACGCCGTACATGTGCTAC 194609 Query 19826 AAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCAAGTCGTCCAAC 19885 || || | ||||| | | ||||||||| || | ||| ||||||| | |||| Sbjct 194608 AAAGATTCAGCGAATAGGATGAACAATCAGAAGCACCTTGGCACGATCAAATGCAGCAAC 194549 Query 19886 CTGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTAATCTGGCG 19945 || || | ||||| |||||| || || | |||| | || |||||||| |||| Sbjct 194548 CTATGCTCGGAAATAATGGAGTACACCGAGGAGAACGAAATAGCGGTGTGTAACTTGGCA 194489 Query 19946 TCCCTGTGCCTGCC 19959 ||||| || |||| Sbjct 194488 TCCCTCGGCTTGCC 194475 Score = 84.2 bits (92), Expect = 2e-11 Identities = 127/180 (71%), Gaps = 3/180 (2%) Strand=Plus/Plus Query 79356 CCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAA 79415 ||||| ||| || || | ||| || |||||| || || || |||||||| || ||||| Sbjct 194786 CCAGTTCTCATCGTTGTGCACCCTCCGCATGAACAGATCAGGTATCCACAGCGCTGTGAA 194845 Query 79416 GAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCAT 79475 | ||||| ||||| |||||| | ||| |||| || | || || || || | Sbjct 194846 AATATCGCGTGCACGCAGCTCCTCTTTACCCGTGTTCTTGCGTATATCAAGGAACTCAAA 194905 Query 79476 GATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCG---CTTGCCGCC 79532 ||| |||| |||||||||||| | ||||| || | ||| ||| || ||||||||| Sbjct 194906 GATATCGGAGTGCCACGGCTCGACGTAGATCGCCATCGATCCCGGTCGTTTCTTGCCGCC 194965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548522201363760