Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vavraia_20culicis_20subsp._20floridensis_20[genbank_20GCA_5F00019279
5.1_202011-03-22] 379 sequences; 6,118,689 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq5 96.9 4e-15
seq16 93.3 5e-14
seq1 93.3 5e-14
>seq5
Length=183138
Score = 96.9 bits (106), Expect = 4e-15
Identities = 118/161 (73%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032
|||||| |||| | || || ||||| || || || || | ||||| ||| ||||||
Sbjct 59755 TTTGCAACACGTGTTATTGCGTTTGCGTGTGTTGAGGGGCTGTTCTTTAGTGGATCGTTC 59814
Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092
|||| |||||||| ||||| || || || ||||| || || | ||||| ||||||
Sbjct 59815 GCATCTATCTTCTGGCTGAAAAAACGCGGTCTTATGCCCGGTCTTACATTCTCTAACGAG 59874
Query 60093 CTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGT 60133
|||| || || ||||||||||| ||| | | ||||| ||
Sbjct 59875 TTGATATCACGTGACGAGGGCCTGCATTATCAATTTGCTGT 59915
>seq16
Length=116485
Score = 93.3 bits (102), Expect = 5e-14
Identities = 319/494 (65%), Gaps = 9/494 (2%)
Strand=Plus/Minus
Query 19472 GGCGGCAA---ACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTC 19528
|||||||| ||| ||| ||| | || |||||| ||||||| |||||| | || ||
Sbjct 65495 GGCGGCAAGAAACGACCGGGATCGATGGCGATCTACGTCGAGCCGTGGCACTCCGATATC 65436
Query 19529 ATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTC 19588
| || ||||| || | ||| |||| |||| | |||||| |||| ||||| |
Sbjct 65435 TTTGAGTTCCTTGATATACGCAAGAACACGGGTAAAGAGGAGCTGCGTGCACGCGATATT 65376
Query 19589 TTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGG 19648
||||| || ||||||| || || || |||||| || ||| | || || || | |||
Sbjct 65375 TTCACAGCGCTGTGGATACCTGATCTGTTCATGCGGAGGGTGCACAACGATGAGAACTGG 65316
Query 19649 CACCTGATGTGCCCGCACGA--ATGCCCTGG-CCTACCCGACGTCTACGGCGAGGCGTTC 19705
||| | | | |||| ||| || | ||| | | | ||||| || | |||
Sbjct 65315 TCGCTGTTCTCCA---ACGATGATGTCCCGAACCTGTACAATCTGTACGGAGATGAGTTT 65259
Query 19706 AATGAGTTGTACCGGACTTACGTAGCCCAGGGCCGGTTCAAGAAGGTGGTCCGGGCCCGG 19765
| || |||| || |||| | | ||| | | | || || || | |
Sbjct 65258 GACAAGGCGTACGAGATGTACGAAAAGAATGGCATGGCGCGGCGGACCGTGCGTGCACAG 65199
Query 19766 GACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACATGTGCTAC 19825
| | ||| | | || | || ||| ||||||| ||||| |||||||||||||||
Sbjct 65198 AAGTTGTGGAAGGCTATTCTGAGCAGTCAGATCGAGACTGGCACGCCGTACATGTGCTAC 65139
Query 19826 AAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCAAGTCGTCCAAC 19885
|| || | ||||| | | ||||||||| || | ||| ||||||| | ||||
Sbjct 65138 AAAGATTCAGCGAATAGGATGAACAATCAGAAGCACCTTGGCACGATCAAATGCAGCAAC 65079
Query 19886 CTGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTAATCTGGCG 19945
|| || | ||||| |||||| || || | |||| | || |||||||| ||||
Sbjct 65078 CTATGCTCGGAAATAATGGAGTACACCGAGGAGAACGAAATAGCGGTGTGTAACTTGGCA 65019
Query 19946 TCCCTGTGCCTGCC 19959
||||| || ||||
Sbjct 65018 TCCCTCGGCTTGCC 65005
Score = 84.2 bits (92), Expect = 2e-11
Identities = 127/180 (71%), Gaps = 3/180 (2%)
Strand=Plus/Plus
Query 79356 CCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAA 79415
||||| ||| || || | ||| || |||||| || || || |||||||| || |||||
Sbjct 65316 CCAGTTCTCATCGTTGTGCACCCTCCGCATGAACAGATCAGGTATCCACAGCGCTGTGAA 65375
Query 79416 GAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCAT 79475
| ||||| ||||| |||||| | ||| |||| || | || || || || |
Sbjct 65376 AATATCGCGTGCACGCAGCTCCTCTTTACCCGTGTTCTTGCGTATATCAAGGAACTCAAA 65435
Query 79476 GATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCG---CTTGCCGCC 79532
||| |||| |||||||||||| | ||||| || | ||| ||| || |||||||||
Sbjct 65436 GATATCGGAGTGCCACGGCTCGACGTAGATCGCCATCGATCCCGGTCGTTTCTTGCCGCC 65495
>seq1
Length=243087
Score = 93.3 bits (102), Expect = 5e-14
Identities = 319/494 (65%), Gaps = 9/494 (2%)
Strand=Plus/Minus
Query 19472 GGCGGCAA---ACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTC 19528
|||||||| ||| ||| ||| | || |||||| ||||||| |||||| | || ||
Sbjct 194965 GGCGGCAAGAAACGACCGGGATCGATGGCGATCTACGTCGAGCCGTGGCACTCCGATATC 194906
Query 19529 ATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTC 19588
| || ||||| || | ||| |||| |||| | |||||| |||| ||||| |
Sbjct 194905 TTTGAGTTCCTTGATATACGCAAGAACACGGGTAAAGAGGAGCTGCGTGCACGCGATATT 194846
Query 19589 TTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGG 19648
||||| || ||||||| || || || |||||| || ||| | || || || | |||
Sbjct 194845 TTCACAGCGCTGTGGATACCTGATCTGTTCATGCGGAGGGTGCACAACGATGAGAACTGG 194786
Query 19649 CACCTGATGTGCCCGCACGA--ATGCCCTGG-CCTACCCGACGTCTACGGCGAGGCGTTC 19705
||| | | | |||| ||| || | ||| | | | ||||| || | |||
Sbjct 194785 TCGCTGTTCTCCA---ACGATGATGTCCCGAACCTGTACAATCTGTACGGAGATGAGTTT 194729
Query 19706 AATGAGTTGTACCGGACTTACGTAGCCCAGGGCCGGTTCAAGAAGGTGGTCCGGGCCCGG 19765
| || |||| || |||| | | ||| | | | || || || | |
Sbjct 194728 GACAAGGCGTACGAGATGTACGAAAAGAATGGCATGGCGCGGCGGACCGTGCGTGCACAG 194669
Query 19766 GACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACATGTGCTAC 19825
| | ||| | | || | || ||| ||||||| ||||| |||||||||||||||
Sbjct 194668 AAGTTGTGGAAGGCTATTCTGAGCAGTCAGATCGAGACTGGCACGCCGTACATGTGCTAC 194609
Query 19826 AAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCAAGTCGTCCAAC 19885
|| || | ||||| | | ||||||||| || | ||| ||||||| | ||||
Sbjct 194608 AAAGATTCAGCGAATAGGATGAACAATCAGAAGCACCTTGGCACGATCAAATGCAGCAAC 194549
Query 19886 CTGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTAATCTGGCG 19945
|| || | ||||| |||||| || || | |||| | || |||||||| ||||
Sbjct 194548 CTATGCTCGGAAATAATGGAGTACACCGAGGAGAACGAAATAGCGGTGTGTAACTTGGCA 194489
Query 19946 TCCCTGTGCCTGCC 19959
||||| || ||||
Sbjct 194488 TCCCTCGGCTTGCC 194475
Score = 84.2 bits (92), Expect = 2e-11
Identities = 127/180 (71%), Gaps = 3/180 (2%)
Strand=Plus/Plus
Query 79356 CCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAA 79415
||||| ||| || || | ||| || |||||| || || || |||||||| || |||||
Sbjct 194786 CCAGTTCTCATCGTTGTGCACCCTCCGCATGAACAGATCAGGTATCCACAGCGCTGTGAA 194845
Query 79416 GAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCAT 79475
| ||||| ||||| |||||| | ||| |||| || | || || || || |
Sbjct 194846 AATATCGCGTGCACGCAGCTCCTCTTTACCCGTGTTCTTGCGTATATCAAGGAACTCAAA 194905
Query 79476 GATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCG---CTTGCCGCC 79532
||| |||| |||||||||||| | ||||| || | ||| ||| || |||||||||
Sbjct 194906 GATATCGGAGTGCCACGGCTCGACGTAGATCGCCATCGATCCCGGTCGTTTCTTGCCGCC 194965
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548522201363760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |