Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vavraia_20culicis_20subsp._20floridensis_20[genbank_20GCA_5F00019279
5.1_202011-03-22] 379 sequences; 6,118,689 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq10 138 1e-27
seq16 111 2e-19
seq1 111 2e-19
>seq10
Length=142875
Score = 138 bits (152), Expect = 1e-27
Identities = 286/426 (67%), Gaps = 0/426 (0%)
Strand=Plus/Minus
Query 117150 ACCCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGA 117209
|||| || || ||||| || ||||| |||| || | ||| ||||||| ||||||||| |
Sbjct 35225 ACCCCGTACCAATACCATCAGCACCGTTCACAAGCACCATTGGCACGATAGGAACGTAAA 35166
Query 117210 ACTCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTCG 117269
| |||| || | | ||| || || ||| || || || | |||| || |||
Sbjct 35165 ATGCAGGTTCTATTTTCAGGTTATCCTCTATGATATAATTCAGAAGAGCATCATCGCTCT 35106
Query 117270 GATCGAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAG 117329
||||||| || ||| || || || ||||||||||| | | || |
Sbjct 35105 CTACGAATATCTTTCGGGTAATATTCGCCAGATTTGTAAAAATGTAACGTGCGGAAGCCG 35046
Query 117330 CATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGT 117389
|||| |||||||| || ||||| |||||||| || || || | ||||| | |
Sbjct 35045 CATCTTTGCCACCTTGCAGGCGCGTGCCGAATTGACCGGCTGGTTCAAGCAGGTTGACAT 34986
Query 117390 TGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCAC 117449
||||| || ||||| | || || | |||| |||||| || | ||| ||| |
Sbjct 34985 TGTTGCTCCCAACAAAATCATGTGCAAGCTTGATAATCGTCTGCTGCAAACTCATCTCGC 34926
Query 117450 CATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTG 117509
| |||||||| |||| ||||| || || || ||| | ||||| || ||||| || || |
Sbjct 34925 CGTGGTGATATGCCGAGTGCTCGGCAACATAACCCACGAGCTGGGCAACCTTAATCTCGG 34866
Query 117510 ACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCAT 117569
| | || ||| |||| | ||| || ||||| || ||||| | ||||| | |||||
Sbjct 34865 ATTTAAGATTCCTCTTAAAGCAACAGTACATCACTTTTCGCTGTCCAGGCTTAAAACCAT 34806
Query 117570 CCGCCA 117575
|| |||
Sbjct 34805 CCACCA 34800
Score = 127 bits (140), Expect = 2e-24
Identities = 286/427 (67%), Gaps = 6/427 (1%)
Strand=Plus/Minus
Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935
|| ||||| || || || |||||||| || || | ||| ||||| ||||| |||||||
Sbjct 35223 CCCGTACCAATACCATCAGCACCGTTCACAAGCACCATTGGCACGATAGGAACGTAAAAT 35164
Query 151936 TCCGGCTCCACCTGTTGACCGTCATCC---ATCACGTATTTCAAAACGGAATTGTCAGCC 151992
| || || | | || | || |||| || | || |||| || | || || |
Sbjct 35163 GCAGGTTCTA--TTTTCAG-GTTATCCTCTATGATATAATTCAGAAGAGCATCATCGCTC 35107
Query 151993 GGATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCC 152052
|||||||| ||| || ||| || | || || ||||| || | | |||
Sbjct 35106 TCTACGAATATCTTTCGGGTAATATTCGCCAGATTTGTAAAAATGTAACGTGCGGAAGCC 35047
Query 152053 GCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGG 152112
||||| ||||||||| ||| ||||| || || || || | || || || |||||||
Sbjct 35046 GCATCTTTGCCACCTTGCAGGCGCGTGCCGAATTGACCGGCTGGTTCAAGCAGGTTGACA 34987
Query 152113 TTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCA 152172
|||||| || || |||| || || | || | |||||| ||||| |||| ||
Sbjct 34986 TTGTTGCTCCCAACAAAATCATGTGCAAGCTTGATAATCGTCTGCTGCAAACTCATCTCG 34927
Query 152173 CCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCC 152232
||||||||||| |||| ||||| || | || ||| | | ||| || ||||| || ||
Sbjct 34926 CCGTGGTGATATGCCGAGTGCTCGGCAACATAACCCACGAGCTGGGCAACCTTAATCTCG 34867
Query 152233 GTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCG 152292
| | || ||| |||| | || ||| ||||| || ||||| || || |||||
Sbjct 34866 GATTTAAGATTCCTCTTAAAGCAACAGTACATCACTTTTCGCTGTCCAGGCTTAAAACCA 34807
Query 152293 TCCACCA 152299
|||||||
Sbjct 34806 TCCACCA 34800
Score = 116 bits (128), Expect = 4e-21
Identities = 259/383 (68%), Gaps = 12/383 (3%)
Strand=Plus/Minus
Query 118013 AGCCCCTTGATATGGGAACCGTCCAGATCCGCATCGGTCATGATCATCAGGCGGCCGTAC 118072
|| ||||||||||| || ||||| ||||| ||||||||| || || | | ||||||||
Sbjct 34245 AGGCCCTTGATATGCGAGCCGTCATGATCCTGATCGGTCATTATTATGACGTGGCCGTAC 34186
Query 118073 CGTAAATCTCTCAGG-GAGTTATAAACCTTACCATGTTGGAGCCCGAGGATCTTTTTAAG 118131
| | | ||||| | || | || |||| ||| || ||| | || || ||||| ||
Sbjct 34185 CTCAGA-CTCTCCGTCGACGTGTACTCCTTGTGATGCTGCAGCGCCAGTATTTTTTTCAG 34127
Query 118132 GTTGGAAAATTCCTCATTTTCCGTCACCTGTTTTATGGTGGCGTCCCGAACGTTGCGCGG 118191
||| | || || || ||| | | |||||| |||| || || ||||| |
Sbjct 34126 ATTGTTCAGCTCTTCGTTCTCCATGATCTGTTTGTGATTGGCCTCGCGCACGTTCAACAA 34067
Query 118192 CTTACCCCGCAGTGGAAACACGCCAAACTTGTCACGGCCCACAACGCTCAAGCCGGCAAT 118251
|||||| ||||| ||||||||||| | | ||| | ||||| || || ||| ||
Sbjct 34066 CTTACCACGCAGAGGAAACACGCCGTAGTGGTCCCTTCCCACCACCGACAGGCCACTTAT 34007
Query 118252 AGCAAGGGCCTTCGCCGAGTCACCCTCGGTAATAATAAGAGTGCACTCGGTGCTGCGA-- 118309
||||| | || || ||||| ||||| || | |||||| | ||||| | |||||
Sbjct 34006 GGCAAGCGTTTTGGCAGAGTCCCCCTCTGTGAGAATAAGCGAGCACTTG----TGCGAGT 33951
Query 118310 --TGAGTACCGGCCCAATTAGCATCATCCAGCTTCGGAACGCCCG-TAATGCGCGACTTT 118366
| || || || ||| ||||| |||||| ||||| | || | || || |
Sbjct 33950 TTTTGGTGCCAGCAAGATTGGCATCGCTCAGCTTTTCCACGCCAGTTATTTTGCTAC-TC 33892
Query 118367 TTGGACCCATCTGTCTTCTTGAG 118389
|| ||||| ||||| ||||||||
Sbjct 33891 TTAGACCCGTCTGTTTTCTTGAG 33869
Score = 105 bits (116), Expect = 7e-18
Identities = 268/405 (66%), Gaps = 2/405 (0%)
Strand=Plus/Minus
Query 152763 GAACATGTTGAGGACCAAGCCCTTGATGTGCGATCCGTCAAGATCCGCGTCGGTCATGAT 152822
||| | ||||| | || ||||||||| ||||| |||||| ||||| |||||||| ||
Sbjct 34261 GAAAAAGTTGATTATCAGGCCCTTGATATGCGAGCCGTCATGATCCTGATCGGTCATTAT 34202
Query 152823 CATCAGACGACCGTAGCGCAGGTCACGTAGT-GACCCGTAGACCTTTCCATGTTGAAGCC 152881
|| | | ||||| | ||| | | || ||| ||| |||| ||| || |||
Sbjct 34201 TATGACGTGGCCGTACCTCAGA-CTCTCCGTCGACGTGTACTCCTTGTGATGCTGCAGCG 34143
Query 152882 CGAGGATCTTTTTGAGGTTGGAAAATTCCTCATTATCGGTCACCTGTTTCACCGTGGCAT 152941
| || || ||||| || ||| | || || || || | | |||||| |||| |
Sbjct 34142 CCAGTATTTTTTTCAGATTGTTCAGCTCTTCGTTCTCCATGATCTGTTTGTGATTGGCCT 34083
Query 152942 CCCGAACATTGCGCGGCTTTCCCCGGAGTGGAAACACGCCGAACGCGTTGCGGCCTACAA 153001
| || || || | ||| || || || |||||||||||| | || | || || |
Sbjct 34082 CGCGCACGTTCAACAACTTACCACGCAGAGGAAACACGCCGTAGTGGTCCCTTCCCACCA 34023
Query 153002 CGCTCAGACCGGCAATAGCAAGGGCTTTCGCCGAGTCACCCTCGGTGATAATAAGCGTAC 153061
| ||| || || ||||| | ||| || ||||| ||||| |||| |||||||| |
Sbjct 34022 CCGACAGGCCACTTATGGCAAGCGTTTTGGCAGAGTCCCCCTCTGTGAGAATAAGCGAGC 33963
Query 153062 AGTCGTGAGACCGATGAGTACCGGCCCAGTTGGCGTCGTCAAGCTTGGGGATTCCCGTGA 153121
| | ||| || | || || || ||||| ||| ||||| | || || |
Sbjct 33962 ACTTGTGCGAGTTTTTGGTGCCAGCAAGATTGGCATCGCTCAGCTTTTCCACGCCAGTTA 33903
Query 153122 TCCTGCTTTTCTTAGAGCCGTCGGTTTTCTTCAGTTCCTTGGTCA 153166
| |||| ||||||| ||||| |||||||| |||| |||| |||
Sbjct 33902 TTTTGCTACTCTTAGACCCGTCTGTTTTCTTGAGTTGCTTGCTCA 33858
>seq16
Length=116485
Score = 111 bits (122), Expect = 2e-19
Identities = 276/413 (67%), Gaps = 16/413 (4%)
Strand=Plus/Minus
Query 53563 GGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCT 53622
||| ||| | || |||||| |||||||||||||| |||| || | ||||| || || |
Sbjct 65478 GGGATCGATGGCGATCTACGTCGAGCCGTGGCACTCCGATATCTTTGAGTTCCTTGATAT 65419
Query 53623 GCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTTTACAGCTCTGTGGA 53681
|| ||| |||| | || ||| |||| ||| || || | || ||||| |||||||
Sbjct 65418 ACGCAAGAACACGGGTAAAGAGGAGCTGCG-TGCACGCGATATTTTCACAGCGCTGTGGA 65360
Query 53682 TTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGA 53741
| || || || ||||||| | |||| | || || ||| | |||| | ||| | | |
Sbjct 65359 TACCTGATCTGTTCATGCGGAGGGTGCACAACGATGAGAACTGGT---CGCTGTTCTCCA 65303
Query 53742 ACGA--GTGCCCCG-GCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGA 53798
|||| || |||| ||| | | | ||||| || |||||| || || ||| ||
Sbjct 65302 ACGATGATGTCCCGAACCTGTACAATCTGTACGGAGATGAGTTTGACAAGGCGTACGAGA 65243
Query 53799 CGTACGCAGTTCAGGGC----CGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGAT 53854
||||| | | ||| ||| | || || || | || | ||| |
Sbjct 65242 TGTACGAAAAGAATGGCATGGCGC----GGCGGACCGTGCGTGCACAGAAGTTGTGGAAG 65187
Query 53855 GCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTC 53914
|| || || | || ||| | ||||| || |||||||||||||||||||| ||||| |
Sbjct 65186 GCTATTCTGAGCAGTCAGATCGAGACTGGCACGCCGTACATGTGCTACAAAGATTCAGCG 65127
Query 53915 AACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAACTTATG 53967
|| || || ||| |||||| || | ||| ||||||| |||||| ||||
Sbjct 65126 AATAGGATGAACAATCAGAAGCACCTTGGCACGATCAAATGCAGCAACCTATG 65074
>seq1
Length=243087
Score = 111 bits (122), Expect = 2e-19
Identities = 276/413 (67%), Gaps = 16/413 (4%)
Strand=Plus/Minus
Query 53563 GGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCT 53622
||| ||| | || |||||| |||||||||||||| |||| || | ||||| || || |
Sbjct 194948 GGGATCGATGGCGATCTACGTCGAGCCGTGGCACTCCGATATCTTTGAGTTCCTTGATAT 194889
Query 53623 GCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTTTACAGCTCTGTGGA 53681
|| ||| |||| | || ||| |||| ||| || || | || ||||| |||||||
Sbjct 194888 ACGCAAGAACACGGGTAAAGAGGAGCTGCG-TGCACGCGATATTTTCACAGCGCTGTGGA 194830
Query 53682 TTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGA 53741
| || || || ||||||| | |||| | || || ||| | |||| | ||| | | |
Sbjct 194829 TACCTGATCTGTTCATGCGGAGGGTGCACAACGATGAGAACTGGT---CGCTGTTCTCCA 194773
Query 53742 ACGA--GTGCCCCG-GCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGA 53798
|||| || |||| ||| | | | ||||| || |||||| || || ||| ||
Sbjct 194772 ACGATGATGTCCCGAACCTGTACAATCTGTACGGAGATGAGTTTGACAAGGCGTACGAGA 194713
Query 53799 CGTACGCAGTTCAGGGC----CGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGAT 53854
||||| | | ||| ||| | || || || | || | ||| |
Sbjct 194712 TGTACGAAAAGAATGGCATGGCGC----GGCGGACCGTGCGTGCACAGAAGTTGTGGAAG 194657
Query 53855 GCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTC 53914
|| || || | || ||| | ||||| || |||||||||||||||||||| ||||| |
Sbjct 194656 GCTATTCTGAGCAGTCAGATCGAGACTGGCACGCCGTACATGTGCTACAAAGATTCAGCG 194597
Query 53915 AACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAACTTATG 53967
|| || || ||| |||||| || | ||| ||||||| |||||| ||||
Sbjct 194596 AATAGGATGAACAATCAGAAGCACCTTGGCACGATCAAATGCAGCAACCTATG 194544
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547213407564200
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