Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vavraia_20culicis_20subsp._20floridensis_20[genbank_20GCA_5F00019279 5.1_202011-03-22] 379 sequences; 6,118,689 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq10 138 1e-27 seq16 111 2e-19 seq1 111 2e-19 >seq10 Length=142875 Score = 138 bits (152), Expect = 1e-27 Identities = 286/426 (67%), Gaps = 0/426 (0%) Strand=Plus/Minus Query 117150 ACCCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGA 117209 |||| || || ||||| || ||||| |||| || | ||| ||||||| ||||||||| | Sbjct 35225 ACCCCGTACCAATACCATCAGCACCGTTCACAAGCACCATTGGCACGATAGGAACGTAAA 35166 Query 117210 ACTCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTCG 117269 | |||| || | | ||| || || ||| || || || | |||| || ||| Sbjct 35165 ATGCAGGTTCTATTTTCAGGTTATCCTCTATGATATAATTCAGAAGAGCATCATCGCTCT 35106 Query 117270 GATCGAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAG 117329 ||||||| || ||| || || || ||||||||||| | | || | Sbjct 35105 CTACGAATATCTTTCGGGTAATATTCGCCAGATTTGTAAAAATGTAACGTGCGGAAGCCG 35046 Query 117330 CATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGT 117389 |||| |||||||| || ||||| |||||||| || || || | ||||| | | Sbjct 35045 CATCTTTGCCACCTTGCAGGCGCGTGCCGAATTGACCGGCTGGTTCAAGCAGGTTGACAT 34986 Query 117390 TGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCAC 117449 ||||| || ||||| | || || | |||| |||||| || | ||| ||| | Sbjct 34985 TGTTGCTCCCAACAAAATCATGTGCAAGCTTGATAATCGTCTGCTGCAAACTCATCTCGC 34926 Query 117450 CATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTG 117509 | |||||||| |||| ||||| || || || ||| | ||||| || ||||| || || | Sbjct 34925 CGTGGTGATATGCCGAGTGCTCGGCAACATAACCCACGAGCTGGGCAACCTTAATCTCGG 34866 Query 117510 ACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCAT 117569 | | || ||| |||| | ||| || ||||| || ||||| | ||||| | ||||| Sbjct 34865 ATTTAAGATTCCTCTTAAAGCAACAGTACATCACTTTTCGCTGTCCAGGCTTAAAACCAT 34806 Query 117570 CCGCCA 117575 || ||| Sbjct 34805 CCACCA 34800 Score = 127 bits (140), Expect = 2e-24 Identities = 286/427 (67%), Gaps = 6/427 (1%) Strand=Plus/Minus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || ||||| || || || |||||||| || || | ||| ||||| ||||| ||||||| Sbjct 35223 CCCGTACCAATACCATCAGCACCGTTCACAAGCACCATTGGCACGATAGGAACGTAAAAT 35164 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCC---ATCACGTATTTCAAAACGGAATTGTCAGCC 151992 | || || | | || | || |||| || | || |||| || | || || | Sbjct 35163 GCAGGTTCTA--TTTTCAG-GTTATCCTCTATGATATAATTCAGAAGAGCATCATCGCTC 35107 Query 151993 GGATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCC 152052 |||||||| ||| || ||| || | || || ||||| || | | ||| Sbjct 35106 TCTACGAATATCTTTCGGGTAATATTCGCCAGATTTGTAAAAATGTAACGTGCGGAAGCC 35047 Query 152053 GCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGG 152112 ||||| ||||||||| ||| ||||| || || || || | || || || ||||||| Sbjct 35046 GCATCTTTGCCACCTTGCAGGCGCGTGCCGAATTGACCGGCTGGTTCAAGCAGGTTGACA 34987 Query 152113 TTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCA 152172 |||||| || || |||| || || | || | |||||| ||||| |||| || Sbjct 34986 TTGTTGCTCCCAACAAAATCATGTGCAAGCTTGATAATCGTCTGCTGCAAACTCATCTCG 34927 Query 152173 CCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCC 152232 ||||||||||| |||| ||||| || | || ||| | | ||| || ||||| || || Sbjct 34926 CCGTGGTGATATGCCGAGTGCTCGGCAACATAACCCACGAGCTGGGCAACCTTAATCTCG 34867 Query 152233 GTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCG 152292 | | || ||| |||| | || ||| ||||| || ||||| || || ||||| Sbjct 34866 GATTTAAGATTCCTCTTAAAGCAACAGTACATCACTTTTCGCTGTCCAGGCTTAAAACCA 34807 Query 152293 TCCACCA 152299 ||||||| Sbjct 34806 TCCACCA 34800 Score = 116 bits (128), Expect = 4e-21 Identities = 259/383 (68%), Gaps = 12/383 (3%) Strand=Plus/Minus Query 118013 AGCCCCTTGATATGGGAACCGTCCAGATCCGCATCGGTCATGATCATCAGGCGGCCGTAC 118072 || ||||||||||| || ||||| ||||| ||||||||| || || | | |||||||| Sbjct 34245 AGGCCCTTGATATGCGAGCCGTCATGATCCTGATCGGTCATTATTATGACGTGGCCGTAC 34186 Query 118073 CGTAAATCTCTCAGG-GAGTTATAAACCTTACCATGTTGGAGCCCGAGGATCTTTTTAAG 118131 | | | ||||| | || | || |||| ||| || ||| | || || ||||| || Sbjct 34185 CTCAGA-CTCTCCGTCGACGTGTACTCCTTGTGATGCTGCAGCGCCAGTATTTTTTTCAG 34127 Query 118132 GTTGGAAAATTCCTCATTTTCCGTCACCTGTTTTATGGTGGCGTCCCGAACGTTGCGCGG 118191 ||| | || || || ||| | | |||||| |||| || || ||||| | Sbjct 34126 ATTGTTCAGCTCTTCGTTCTCCATGATCTGTTTGTGATTGGCCTCGCGCACGTTCAACAA 34067 Query 118192 CTTACCCCGCAGTGGAAACACGCCAAACTTGTCACGGCCCACAACGCTCAAGCCGGCAAT 118251 |||||| ||||| ||||||||||| | | ||| | ||||| || || ||| || Sbjct 34066 CTTACCACGCAGAGGAAACACGCCGTAGTGGTCCCTTCCCACCACCGACAGGCCACTTAT 34007 Query 118252 AGCAAGGGCCTTCGCCGAGTCACCCTCGGTAATAATAAGAGTGCACTCGGTGCTGCGA-- 118309 ||||| | || || ||||| ||||| || | |||||| | ||||| | ||||| Sbjct 34006 GGCAAGCGTTTTGGCAGAGTCCCCCTCTGTGAGAATAAGCGAGCACTTG----TGCGAGT 33951 Query 118310 --TGAGTACCGGCCCAATTAGCATCATCCAGCTTCGGAACGCCCG-TAATGCGCGACTTT 118366 | || || || ||| ||||| |||||| ||||| | || | || || | Sbjct 33950 TTTTGGTGCCAGCAAGATTGGCATCGCTCAGCTTTTCCACGCCAGTTATTTTGCTAC-TC 33892 Query 118367 TTGGACCCATCTGTCTTCTTGAG 118389 || ||||| ||||| |||||||| Sbjct 33891 TTAGACCCGTCTGTTTTCTTGAG 33869 Score = 105 bits (116), Expect = 7e-18 Identities = 268/405 (66%), Gaps = 2/405 (0%) Strand=Plus/Minus Query 152763 GAACATGTTGAGGACCAAGCCCTTGATGTGCGATCCGTCAAGATCCGCGTCGGTCATGAT 152822 ||| | ||||| | || ||||||||| ||||| |||||| ||||| |||||||| || Sbjct 34261 GAAAAAGTTGATTATCAGGCCCTTGATATGCGAGCCGTCATGATCCTGATCGGTCATTAT 34202 Query 152823 CATCAGACGACCGTAGCGCAGGTCACGTAGT-GACCCGTAGACCTTTCCATGTTGAAGCC 152881 || | | ||||| | ||| | | || ||| ||| |||| ||| || ||| Sbjct 34201 TATGACGTGGCCGTACCTCAGA-CTCTCCGTCGACGTGTACTCCTTGTGATGCTGCAGCG 34143 Query 152882 CGAGGATCTTTTTGAGGTTGGAAAATTCCTCATTATCGGTCACCTGTTTCACCGTGGCAT 152941 | || || ||||| || ||| | || || || || | | |||||| |||| | Sbjct 34142 CCAGTATTTTTTTCAGATTGTTCAGCTCTTCGTTCTCCATGATCTGTTTGTGATTGGCCT 34083 Query 152942 CCCGAACATTGCGCGGCTTTCCCCGGAGTGGAAACACGCCGAACGCGTTGCGGCCTACAA 153001 | || || || | ||| || || || |||||||||||| | || | || || | Sbjct 34082 CGCGCACGTTCAACAACTTACCACGCAGAGGAAACACGCCGTAGTGGTCCCTTCCCACCA 34023 Query 153002 CGCTCAGACCGGCAATAGCAAGGGCTTTCGCCGAGTCACCCTCGGTGATAATAAGCGTAC 153061 | ||| || || ||||| | ||| || ||||| ||||| |||| |||||||| | Sbjct 34022 CCGACAGGCCACTTATGGCAAGCGTTTTGGCAGAGTCCCCCTCTGTGAGAATAAGCGAGC 33963 Query 153062 AGTCGTGAGACCGATGAGTACCGGCCCAGTTGGCGTCGTCAAGCTTGGGGATTCCCGTGA 153121 | | ||| || | || || || ||||| ||| ||||| | || || | Sbjct 33962 ACTTGTGCGAGTTTTTGGTGCCAGCAAGATTGGCATCGCTCAGCTTTTCCACGCCAGTTA 33903 Query 153122 TCCTGCTTTTCTTAGAGCCGTCGGTTTTCTTCAGTTCCTTGGTCA 153166 | |||| ||||||| ||||| |||||||| |||| |||| ||| Sbjct 33902 TTTTGCTACTCTTAGACCCGTCTGTTTTCTTGAGTTGCTTGCTCA 33858 >seq16 Length=116485 Score = 111 bits (122), Expect = 2e-19 Identities = 276/413 (67%), Gaps = 16/413 (4%) Strand=Plus/Minus Query 53563 GGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCT 53622 ||| ||| | || |||||| |||||||||||||| |||| || | ||||| || || | Sbjct 65478 GGGATCGATGGCGATCTACGTCGAGCCGTGGCACTCCGATATCTTTGAGTTCCTTGATAT 65419 Query 53623 GCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTTTACAGCTCTGTGGA 53681 || ||| |||| | || ||| |||| ||| || || | || ||||| ||||||| Sbjct 65418 ACGCAAGAACACGGGTAAAGAGGAGCTGCG-TGCACGCGATATTTTCACAGCGCTGTGGA 65360 Query 53682 TTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGA 53741 | || || || ||||||| | |||| | || || ||| | |||| | ||| | | | Sbjct 65359 TACCTGATCTGTTCATGCGGAGGGTGCACAACGATGAGAACTGGT---CGCTGTTCTCCA 65303 Query 53742 ACGA--GTGCCCCG-GCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGA 53798 |||| || |||| ||| | | | ||||| || |||||| || || ||| || Sbjct 65302 ACGATGATGTCCCGAACCTGTACAATCTGTACGGAGATGAGTTTGACAAGGCGTACGAGA 65243 Query 53799 CGTACGCAGTTCAGGGC----CGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGAT 53854 ||||| | | ||| ||| | || || || | || | ||| | Sbjct 65242 TGTACGAAAAGAATGGCATGGCGC----GGCGGACCGTGCGTGCACAGAAGTTGTGGAAG 65187 Query 53855 GCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTC 53914 || || || | || ||| | ||||| || |||||||||||||||||||| ||||| | Sbjct 65186 GCTATTCTGAGCAGTCAGATCGAGACTGGCACGCCGTACATGTGCTACAAAGATTCAGCG 65127 Query 53915 AACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAACTTATG 53967 || || || ||| |||||| || | ||| ||||||| |||||| |||| Sbjct 65126 AATAGGATGAACAATCAGAAGCACCTTGGCACGATCAAATGCAGCAACCTATG 65074 >seq1 Length=243087 Score = 111 bits (122), Expect = 2e-19 Identities = 276/413 (67%), Gaps = 16/413 (4%) Strand=Plus/Minus Query 53563 GGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCT 53622 ||| ||| | || |||||| |||||||||||||| |||| || | ||||| || || | Sbjct 194948 GGGATCGATGGCGATCTACGTCGAGCCGTGGCACTCCGATATCTTTGAGTTCCTTGATAT 194889 Query 53623 GCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTTTACAGCTCTGTGGA 53681 || ||| |||| | || ||| |||| ||| || || | || ||||| ||||||| Sbjct 194888 ACGCAAGAACACGGGTAAAGAGGAGCTGCG-TGCACGCGATATTTTCACAGCGCTGTGGA 194830 Query 53682 TTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGA 53741 | || || || ||||||| | |||| | || || ||| | |||| | ||| | | | Sbjct 194829 TACCTGATCTGTTCATGCGGAGGGTGCACAACGATGAGAACTGGT---CGCTGTTCTCCA 194773 Query 53742 ACGA--GTGCCCCG-GCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGA 53798 |||| || |||| ||| | | | ||||| || |||||| || || ||| || Sbjct 194772 ACGATGATGTCCCGAACCTGTACAATCTGTACGGAGATGAGTTTGACAAGGCGTACGAGA 194713 Query 53799 CGTACGCAGTTCAGGGC----CGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGAT 53854 ||||| | | ||| ||| | || || || | || | ||| | Sbjct 194712 TGTACGAAAAGAATGGCATGGCGC----GGCGGACCGTGCGTGCACAGAAGTTGTGGAAG 194657 Query 53855 GCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTC 53914 || || || | || ||| | ||||| || |||||||||||||||||||| ||||| | Sbjct 194656 GCTATTCTGAGCAGTCAGATCGAGACTGGCACGCCGTACATGTGCTACAAAGATTCAGCG 194597 Query 53915 AACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAACTTATG 53967 || || || ||| |||||| || | ||| ||||||| |||||| |||| Sbjct 194596 AATAGGATGAACAATCAGAAGCACCTTGGCACGATCAAATGCAGCAACCTATG 194544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547213407564200