Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vavraia_20culicis_20subsp._20floridensis_20[genbank_20GCA_5F00019279
5.1_202011-03-22] 379 sequences; 6,118,689 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq10 131 2e-25
seq57 127 2e-24
seq13 123 3e-23
>seq10
Length=142875
Score = 131 bits (144), Expect = 2e-25
Identities = 263/385 (68%), Gaps = 4/385 (1%)
Strand=Plus/Plus
Query 31156 AAGGAGCTCAAGAAAACAGATGGGTCCAAAAAGTCTC-GAATTACGGGAATTCCGAAGCT 31214
||| | |||||||||||||| |||| | || ||| | ||| || || | |||||
Sbjct 33863 AAGCAACTCAAGAAAACAGACGGGT-CTAAGAGTAGCAAAATAACTGGCGTGGAAAAGCT 33921
Query 31215 CGACGACGCCAACTGGGCCGGTACCCACAAGTCGCACGAGTGCACGCTTATTATTACCGA 31274
||| ||||| || || ||| | || |||||| ||||| |||||||| | || ||
Sbjct 33922 GAGCGATGCCAATCTTGCTGGCACCAAAAACTCGCACAAGTGCTCGCTTATTCTCACAGA 33981
Query 31275 GGGTGACTCGGCAAAGGCGCTTGCTATTGCTGGCTTGAGTGTTGTGGGGCGCAATGCGTT 31334
||| ||||| || || ||||||| || |||| || || ||||| | | |
Sbjct 33982 GGGGGACTCTGCCAAAACGCTTGCCATAAGTGGCCTGTCGGTGGTGGGAAGGGACCACTA 34041
Query 31335 CGGGGTGTTTCCGCTCCGAGGCAAGCCGCGTAACGTTCGTGACGCCTCCGTTAAACAGGT 31394
||| |||||||| || || || ||| | ||||| || || ||| |||||| |
Sbjct 34042 CGGCGTGTTTCCTCTGCGTGGTAAGTTGTTGAACGTGCGCGAGGCCAATCACAAACAGAT 34101
Query 31395 TACGGATAATGAAGAGTTTTCCAACCTGAAAAAGATCCTCGGGCTTCAGCATGGCAAGGT 31454
| ||| || |||||| | ||| |||||||| || || | ||| |||||| |||||
Sbjct 34102 CATGGAGAACGAAGAGCTGAACAATCTGAAAAAAATACTGGCGCTGCAGCATCACAAGGA 34161
Query 31455 ATATAATTC-ACTGAGAGAATTGCGGTACGGTCGCCTCATGATTATGACCGACGCAGATC 31513
|| | || || ||||| || ||||||| | | |||| || |||||||| ||||
Sbjct 34162 GTACACGTCGACGGAGAG-TCTGAGGTACGGCCACGTCATAATAATGACCGATCAGGATC 34220
Query 31514 TCGACGGCAGTCACATCAAGGGTCT 31538
|||||| || |||||||| ||
Sbjct 34221 ATGACGGCTCGCATATCAAGGGCCT 34245
Score = 87.8 bits (96), Expect = 2e-12
Identities = 182/271 (67%), Gaps = 0/271 (0%)
Strand=Plus/Plus
Query 31979 TGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACC 32038
||| ||| || | |||||| |||||| || ||||| ||| ||| | |||| ||| |
Sbjct 34800 TGGTGGATGGTTTTAAGCCTGGACAGCGAAAAGTGATGTACTGTTGCTTTAAGAGGAATC 34859
Query 32039 TGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATC 32098
| || || ||||| || ||||| ||| || || || ||||| |||| ||||
Sbjct 34860 TTAAATCCGAGATTAAGGTTGCCCAGCTCGTGGGTTATGTTGCCGAGCACTCGGCATATC 34919
Query 32099 ACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTG 32158
||||||||||| | | ||| || ||| |||| ||||| || | ||||| ||
Sbjct 34920 ACCACGGCGAGATGAGTTTGCAGCAGACGATTATCAAGCTTGCACATGATTTTGTTGGGA 34979
Query 32159 CAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCA 32218
|| || | ||| | || || ||| | || || || || || || || |||||||
Sbjct 34980 GCAACAATGTCAACCTGCTTGAACCAGCCGGTCAATTCGGCACGCGCCTGCAAGGTGGCA 35039
Query 32219 AGGATGCTGCGAGCTCCCGTTACATCTTCAC 32249
| ||||| || | | |||||||| || ||
Sbjct 35040 AAGATGCGGCTTCCGCACGTTACATTTTTAC 35070
>seq57
Length=32437
Score = 127 bits (140), Expect = 2e-24
Identities = 127/165 (77%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 27404 TAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAG 27463
|||||||||| || || ||||| || || || ||||| ||||| |||||||| ||| |
Sbjct 26119 TAATGCAAATATTCGTTAAGACACTCACGGGTAAGACCATTACGCTTGAGGTCGAGCCTT 26060
Query 27464 GTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523
|| | || ||| | || ||||||| ||||||||||||| |||||||| ||||
Sbjct 26059 CAGACACGATAAGTAATGTAAAAAATAAAATTAAGGACAAGGAGGGCATTCCTCCTGACC 26000
Query 27524 AGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTA 27568
||||||| || |||||||| || ||||| || ||||||| ||||
Sbjct 25999 AGCAGCGGCTTATTTTTGCGGGCAAGCAGCTTGAGGATGGACGTA 25955
>seq13
Length=120561
Score = 123 bits (136), Expect = 3e-23
Identities = 144/192 (75%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || || || || || || |||||||| || || |||||||| |||||
Sbjct 71965 ATGCAGATATTCGTAAAAACACTCACAGGCAAGACAATAACACTTGAGGTGGAGTCGTCC 71906
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | ||| | ||||| || || |||||||||||||| || || || || |||
Sbjct 71905 GACACCATCGAGAATGTAAAGGCGAAGATACAGGACAAGGAGGGGATACCACCCGATCAG 71846
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584
|| || || || ||||| || ||||| || ||||||| || || || ||| ||||||||
Sbjct 71845 CAACGACTCATATTTGCGGGCAAGCAGCTTGAGGATGGACGGACGCTGAGC-GACTATAA 71787
Query 27585 TGTCCAAAAGGA 27596
| | || |||||
Sbjct 71786 TATACAGAAGGA 71775
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570307698154480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |