Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vavraia_20culicis_20subsp._20floridensis_20[genbank_20GCA_5F00019279 5.1_202011-03-22] 379 sequences; 6,118,689 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq10 131 2e-25 seq57 127 2e-24 seq13 123 3e-23 >seq10 Length=142875 Score = 131 bits (144), Expect = 2e-25 Identities = 263/385 (68%), Gaps = 4/385 (1%) Strand=Plus/Plus Query 31156 AAGGAGCTCAAGAAAACAGATGGGTCCAAAAAGTCTC-GAATTACGGGAATTCCGAAGCT 31214 ||| | |||||||||||||| |||| | || ||| | ||| || || | ||||| Sbjct 33863 AAGCAACTCAAGAAAACAGACGGGT-CTAAGAGTAGCAAAATAACTGGCGTGGAAAAGCT 33921 Query 31215 CGACGACGCCAACTGGGCCGGTACCCACAAGTCGCACGAGTGCACGCTTATTATTACCGA 31274 ||| ||||| || || ||| | || |||||| ||||| |||||||| | || || Sbjct 33922 GAGCGATGCCAATCTTGCTGGCACCAAAAACTCGCACAAGTGCTCGCTTATTCTCACAGA 33981 Query 31275 GGGTGACTCGGCAAAGGCGCTTGCTATTGCTGGCTTGAGTGTTGTGGGGCGCAATGCGTT 31334 ||| ||||| || || ||||||| || |||| || || ||||| | | | Sbjct 33982 GGGGGACTCTGCCAAAACGCTTGCCATAAGTGGCCTGTCGGTGGTGGGAAGGGACCACTA 34041 Query 31335 CGGGGTGTTTCCGCTCCGAGGCAAGCCGCGTAACGTTCGTGACGCCTCCGTTAAACAGGT 31394 ||| |||||||| || || || ||| | ||||| || || ||| |||||| | Sbjct 34042 CGGCGTGTTTCCTCTGCGTGGTAAGTTGTTGAACGTGCGCGAGGCCAATCACAAACAGAT 34101 Query 31395 TACGGATAATGAAGAGTTTTCCAACCTGAAAAAGATCCTCGGGCTTCAGCATGGCAAGGT 31454 | ||| || |||||| | ||| |||||||| || || | ||| |||||| ||||| Sbjct 34102 CATGGAGAACGAAGAGCTGAACAATCTGAAAAAAATACTGGCGCTGCAGCATCACAAGGA 34161 Query 31455 ATATAATTC-ACTGAGAGAATTGCGGTACGGTCGCCTCATGATTATGACCGACGCAGATC 31513 || | || || ||||| || ||||||| | | |||| || |||||||| |||| Sbjct 34162 GTACACGTCGACGGAGAG-TCTGAGGTACGGCCACGTCATAATAATGACCGATCAGGATC 34220 Query 31514 TCGACGGCAGTCACATCAAGGGTCT 31538 |||||| || |||||||| || Sbjct 34221 ATGACGGCTCGCATATCAAGGGCCT 34245 Score = 87.8 bits (96), Expect = 2e-12 Identities = 182/271 (67%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 31979 TGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACC 32038 ||| ||| || | |||||| |||||| || ||||| ||| ||| | |||| ||| | Sbjct 34800 TGGTGGATGGTTTTAAGCCTGGACAGCGAAAAGTGATGTACTGTTGCTTTAAGAGGAATC 34859 Query 32039 TGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATC 32098 | || || ||||| || ||||| ||| || || || ||||| |||| |||| Sbjct 34860 TTAAATCCGAGATTAAGGTTGCCCAGCTCGTGGGTTATGTTGCCGAGCACTCGGCATATC 34919 Query 32099 ACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTG 32158 ||||||||||| | | ||| || ||| |||| ||||| || | ||||| || Sbjct 34920 ACCACGGCGAGATGAGTTTGCAGCAGACGATTATCAAGCTTGCACATGATTTTGTTGGGA 34979 Query 32159 CAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCA 32218 || || | ||| | || || ||| | || || || || || || || ||||||| Sbjct 34980 GCAACAATGTCAACCTGCTTGAACCAGCCGGTCAATTCGGCACGCGCCTGCAAGGTGGCA 35039 Query 32219 AGGATGCTGCGAGCTCCCGTTACATCTTCAC 32249 | ||||| || | | |||||||| || || Sbjct 35040 AAGATGCGGCTTCCGCACGTTACATTTTTAC 35070 >seq57 Length=32437 Score = 127 bits (140), Expect = 2e-24 Identities = 127/165 (77%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 27404 TAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAG 27463 |||||||||| || || ||||| || || || ||||| ||||| |||||||| ||| | Sbjct 26119 TAATGCAAATATTCGTTAAGACACTCACGGGTAAGACCATTACGCTTGAGGTCGAGCCTT 26060 Query 27464 GTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523 || | || ||| | || ||||||| ||||||||||||| |||||||| |||| Sbjct 26059 CAGACACGATAAGTAATGTAAAAAATAAAATTAAGGACAAGGAGGGCATTCCTCCTGACC 26000 Query 27524 AGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTA 27568 ||||||| || |||||||| || ||||| || ||||||| |||| Sbjct 25999 AGCAGCGGCTTATTTTTGCGGGCAAGCAGCTTGAGGATGGACGTA 25955 >seq13 Length=120561 Score = 123 bits (136), Expect = 3e-23 Identities = 144/192 (75%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || || || || || |||||||| || || |||||||| ||||| Sbjct 71965 ATGCAGATATTCGTAAAAACACTCACAGGCAAGACAATAACACTTGAGGTGGAGTCGTCC 71906 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || || |||||||||||||| || || || || ||| Sbjct 71905 GACACCATCGAGAATGTAAAGGCGAAGATACAGGACAAGGAGGGGATACCACCCGATCAG 71846 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 || || || || ||||| || ||||| || ||||||| || || || ||| |||||||| Sbjct 71845 CAACGACTCATATTTGCGGGCAAGCAGCTTGAGGATGGACGGACGCTGAGC-GACTATAA 71787 Query 27585 TGTCCAAAAGGA 27596 | | || ||||| Sbjct 71786 TATACAGAAGGA 71775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570307698154480