Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vavraia_20culicis_20subsp._20floridensis_20[genbank_20GCA_5F00019279 5.1_202011-03-22] 379 sequences; 6,118,689 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq13 123 6e-23 seq57 116 9e-21 >seq13 Length=120561 Score = 123 bits (136), Expect = 6e-23 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || || || || || | ||| || ||| ||| || || || ||||| || || ||| Sbjct 71745 CGCAGCCTGAGCACCAAGTGCAGCGTGCTCTCCTTCTGTATATTATAGTCGCTCAGCGTC 71804 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | |||||| || ||||||||||| || || || || ||||| || || || || | || Sbjct 71805 CGTCCATCCTCAAGCTGCTTGCCCGCAAATATGAGTCGTTGCTGATCGGGTGGTATCCCC 71864 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||| ||||| || || || ||||||||||| || || ||||| || Sbjct 71865 TCCTTGTCCTGTATCTTCGCCTTTACATTCTCGATGGTGTCGGACGACTCCACCTCAAGT 71924 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| || ||||| || ||||| || | |||||| Sbjct 71925 GTTATTGTCTTGCCTGTGAGTGTTTTTACGAATATCTGCAT 71965 >seq57 Length=32437 Score = 116 bits (128), Expect = 9e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 || || || ||||| || | || ||| || || ||||| ||||| || | | | Sbjct 25900 AGCCTAAGCACAAGATGCAACGTACTCTCCTTCTGTATGTTGTAATCACTCAGACTACGT 25959 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 ||||| || ||||||||||| || || ||||| || || ||||||||||||| || ||| Sbjct 25960 CCATCCTCAAGCTGCTTGCCCGCAAAAATAAGCCGCTGCTGGTCAGGAGGAATGCCCTCC 26019 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 ||||||| || || | ||| || || || ||||| || || ||||| || || Sbjct 26020 TTGTCCTTAATTTTATTTTTTACATTACTTATCGTGTCTGAAGGCTCGACCTCAAGCGTA 26079 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || ||||| |||||||| ||||| || || | |||||| Sbjct 26080 ATGGTCTTACCCGTGAGTGTCTTAACGAATATTTGCATT 26118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159146371230335