Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vavraia_20culicis_20subsp._20floridensis_20[genbank_20GCA_5F00019279 5.1_202011-03-22] 379 sequences; 6,118,689 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq13 114 1e-20 seq57 102 7e-17 >seq13 Length=120561 Score = 114 bits (126), Expect = 1e-20 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || ||||||||||| || ||||||||||| ||| || || ||| | || || Sbjct 71756 CACCAAGTGCAGCGTGCTCTCCTTCTGTATATTATAGTCGCTCAGCGTCCGTCCATCCTC 71815 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||| |||||||||||||| || || ||||| |||| || | | ||| |||||| Sbjct 71816 AAGCTGCTTGCCCGCAAATATGAGTCGTTGCTGATCGGGTGGTATCCCCTCCTTGTCCTG 71875 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 || ||| || | || | | || ||| ||||||||| || | || || | || Sbjct 71876 TATCTTCGCCTTTACATTCTCGATGGTGTCGGACGACTCCACCTCAAGTGTTATTGTCTT 71935 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 || || || ||||| || || || |||||| Sbjct 71936 GCCTGTGAGTGTTTTTACGAATATCTGCATC 71966 >seq57 Length=32437 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAA-CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 ||||| || | || ||| ||| | ||| | ||| ||||| || ||||| || ||||| Sbjct 25891 CCTCCCCTCA-GCCTAAGCACAAGATGCAACGTACTCTCCTTCTGTATGTTGTAATCACT 25949 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGG 39176 || | ||| | || |||||||| ||||||||||| ||||| ||||||||||| | || Sbjct 25950 CAGACTACGTCCATCCTCAAGCTGCTTGCCCGCAAAAATAAGCCGCTGCTGGTCAGGAGG 26009 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236 | || ||| |||||| | ||||| | ||| | | | ||| || | ||| || Sbjct 26010 AATGCCCTCCTTGTCCTTAATTTTATTTTTTACATTACTTATCGTGTCTGAAGGCTCGAC 26069 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | ||| || | || ||||| || || ||||| || |||||||| Sbjct 26070 CTCAAGCGTAATGGTCTTACCCGTGAGTGTCTTAACGAATATTTGCAT 26117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429543615902027