Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vavraia_20culicis_20subsp._20floridensis_20[genbank_20GCA_5F00019279
5.1_202011-03-22] 379 sequences; 6,118,689 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq57 136 8e-27
seq13 125 1e-23
seq10 109 1e-18
>seq57
Length=32437
Score = 136 bits (150), Expect = 8e-27
Identities = 167/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|| || | ||| | ||| || ||||| ||||| || || || || |||||||| |||
Sbjct 25891 CCTCCCCTCAGCCTAAGCACAAGATGCAACGTACTCTCCTTCTGTATGTTGTAATCACTC 25950
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| | || |||||||| || || || || ||||| || | || || |||||| |||
Sbjct 25951 AGACTACGTCCATCCTCAAGCTGCTTGCCCGCAAAAATAAGCCGCTGCTGGTCAGGAGGA 26010
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| ||||||||||| | || || |||||| || || ||||| |||| |||||
Sbjct 26011 ATGCCCTCCTTGTCCTTAATTTTATTTTTTACATTACTTATCGTGTCTGAAGGCTCGACC 26070
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100
|| || || || ||||||||||| | |||||||||||||| ||||||
Sbjct 26071 TCAAGCGTAATGGTCTTACCCGTGAGTGTCTTAACGAATATTTGCATT 26118
>seq13
Length=120561
Score = 125 bits (138), Expect = 1e-23
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
||||| ||||| | || |||| || | |||||| || || || || || |||||
Sbjct 71739 CCACCCCGCAGCCTGAGCACCAAGTGCAGCGTGCTCTCCTTCTGTATATTATAGTCGCTC 71798
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
||||| || |||||||| || || || || ||||| || | ||||| || || ||
Sbjct 71799 AGCGTCCGTCCATCCTCAAGCTGCTTGCCCGCAAATATGAGTCGTTGCTGATCGGGTGGT 71858
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| ||||||||||| || ||||| || ||||| | ||||| ||||| || | || ||
Sbjct 71859 ATCCCCTCCTTGTCCTGTATCTTCGCCTTTACATTCTCGATGGTGTCGGACGACTCCACC 71918
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| || || || ||||| || || | || || ||||||||||||||
Sbjct 71919 TCAAGTGTTATTGTCTTGCCTGTGAGTGTTTTTACGAATATCTGCAT 71965
>seq10
Length=142875
Score = 109 bits (120), Expect = 1e-18
Identities = 325/499 (65%), Gaps = 12/499 (2%)
Strand=Plus/Minus
Query 273622 ACCAACCGGTGCCAATACCGGAAGAACCATTCACCAGAATACTCGGGATAATTGGGACAT 273681
|||| || || |||||||| || ||| ||||| || | | || | || || || |
Sbjct 35228 ACCACCCCGTACCAATACCATCAGCACCGTTCACAAGCACCATTGGCACGATAGGAACGT 35169
Query 273682 AATATTCGGGCTCAATTTTATCACCATCGTCGTAAAGGTACTTCAACAAAGCATCATCCG 273741
|| || | || || ||||| ||| || | || |||| | |||||||||
Sbjct 35168 AAAATGCAGGTTCTATTTTCAGGTTATCCTCTATGATATAATTCAGAAGAGCATCATCGC 35109
Query 273742 TATCAACGAAAACCTTTCGCGTCTGAGGATTC---AGTTTCGTGAAAATGTACCTGGC-- 273796
| || ||||| | |||||| || | |||| || || || |||||||| | ||
Sbjct 35108 TCTCTACGAATATCTTTCGGGT---AATATTCGCCAGATTTGTAAAAATGTAACGTGCGG 35052
Query 273797 -ACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGACCCTCGGGCAGTAGCC 273855
| ||||| | |||||||||||||| | || || || ||||| | || |||
Sbjct 35051 AAGCCGCAT---CTTTGCCACCTTGCAGGCGCGTGCCGAATTGACCGGCTGGTTCAAGCA 34995
Query 273856 AGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACGATAGTCCCCTGAAGGG 273915
||| | |||||||| || || |||| || || | || | || ||| ||| |
Sbjct 34994 GGTTGACATTGTTGCTCCCAACAAAATCATGTGCAAGCTTGATAATCGTCTGCTGCAAAC 34935
Query 273916 ATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATAACCACTGAACTGAGCAACCT 273975
| ||||||||||||||| || ||| ||||| | |||||| || ||| |||||||
Sbjct 34934 TCATCTCGCCGTGGTGATATGCCGAGTGCTCGGCAACATAACCCACGAGCTGGGCAACCT 34875
Query 273976 TCACATCGCTCGTCAAGTTTCGCTTGAATGCGGAATACAACACCTTCCGCTGCGAGGGCT 274035
| | ||| | | || | ||| || | |||| ||| || ||||| ||||
Sbjct 34874 TAATCTCGGATTTAAGATTCCTCTTAAAGCAACAGTACATCACTTTTCGCTGTCCAGGCT 34815
Query 274036 TGAACCCATCAACGACCGATGGAATACTGCGTTCCAAATCATACCGAGAGAACAAAATCA 274095
| || ||||| || | || || || || || | ||| | |||||||||||| |
Sbjct 34814 TAAAACCATCCACCATGGAAGGTATGCTACGCACATTATCTGCCATAGAGAACAAAATGA 34755
Query 274096 GTTCCTTGTCAATGAAGTC 274114
| || |||| |||||||||
Sbjct 34754 GCTCTTTGTTAATGAAGTC 34736
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046734117099866
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |