Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vavraia_20culicis_20subsp._20floridensis_20[genbank_20GCA_5F00019279 5.1_202011-03-22] 379 sequences; 6,118,689 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq57 136 8e-27 seq13 125 1e-23 seq10 109 1e-18 >seq57 Length=32437 Score = 136 bits (150), Expect = 8e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || | ||| | ||| || ||||| ||||| || || || || |||||||| ||| Sbjct 25891 CCTCCCCTCAGCCTAAGCACAAGATGCAACGTACTCTCCTTCTGTATGTTGTAATCACTC 25950 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || | || |||||||| || || || || ||||| || | || || |||||| ||| Sbjct 25951 AGACTACGTCCATCCTCAAGCTGCTTGCCCGCAAAAATAAGCCGCTGCTGGTCAGGAGGA 26010 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| | || || |||||| || || ||||| |||| ||||| Sbjct 26011 ATGCCCTCCTTGTCCTTAATTTTATTTTTTACATTACTTATCGTGTCTGAAGGCTCGACC 26070 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || || || || ||||||||||| | |||||||||||||| |||||| Sbjct 26071 TCAAGCGTAATGGTCTTACCCGTGAGTGTCTTAACGAATATTTGCATT 26118 >seq13 Length=120561 Score = 125 bits (138), Expect = 1e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| ||||| | || |||| || | |||||| || || || || || ||||| Sbjct 71739 CCACCCCGCAGCCTGAGCACCAAGTGCAGCGTGCTCTCCTTCTGTATATTATAGTCGCTC 71798 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||| || |||||||| || || || || ||||| || | ||||| || || || Sbjct 71799 AGCGTCCGTCCATCCTCAAGCTGCTTGCCCGCAAATATGAGTCGTTGCTGATCGGGTGGT 71858 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| || ||||| || ||||| | ||||| ||||| || | || || Sbjct 71859 ATCCCCTCCTTGTCCTGTATCTTCGCCTTTACATTCTCGATGGTGTCGGACGACTCCACC 71918 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || || ||||| || || | || || |||||||||||||| Sbjct 71919 TCAAGTGTTATTGTCTTGCCTGTGAGTGTTTTTACGAATATCTGCAT 71965 >seq10 Length=142875 Score = 109 bits (120), Expect = 1e-18 Identities = 325/499 (65%), Gaps = 12/499 (2%) Strand=Plus/Minus Query 273622 ACCAACCGGTGCCAATACCGGAAGAACCATTCACCAGAATACTCGGGATAATTGGGACAT 273681 |||| || || |||||||| || ||| ||||| || | | || | || || || | Sbjct 35228 ACCACCCCGTACCAATACCATCAGCACCGTTCACAAGCACCATTGGCACGATAGGAACGT 35169 Query 273682 AATATTCGGGCTCAATTTTATCACCATCGTCGTAAAGGTACTTCAACAAAGCATCATCCG 273741 || || | || || ||||| ||| || | || |||| | ||||||||| Sbjct 35168 AAAATGCAGGTTCTATTTTCAGGTTATCCTCTATGATATAATTCAGAAGAGCATCATCGC 35109 Query 273742 TATCAACGAAAACCTTTCGCGTCTGAGGATTC---AGTTTCGTGAAAATGTACCTGGC-- 273796 | || ||||| | |||||| || | |||| || || || |||||||| | || Sbjct 35108 TCTCTACGAATATCTTTCGGGT---AATATTCGCCAGATTTGTAAAAATGTAACGTGCGG 35052 Query 273797 -ACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGACCCTCGGGCAGTAGCC 273855 | ||||| | |||||||||||||| | || || || ||||| | || ||| Sbjct 35051 AAGCCGCAT---CTTTGCCACCTTGCAGGCGCGTGCCGAATTGACCGGCTGGTTCAAGCA 34995 Query 273856 AGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACGATAGTCCCCTGAAGGG 273915 ||| | |||||||| || || |||| || || | || | || ||| ||| | Sbjct 34994 GGTTGACATTGTTGCTCCCAACAAAATCATGTGCAAGCTTGATAATCGTCTGCTGCAAAC 34935 Query 273916 ATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATAACCACTGAACTGAGCAACCT 273975 | ||||||||||||||| || ||| ||||| | |||||| || ||| ||||||| Sbjct 34934 TCATCTCGCCGTGGTGATATGCCGAGTGCTCGGCAACATAACCCACGAGCTGGGCAACCT 34875 Query 273976 TCACATCGCTCGTCAAGTTTCGCTTGAATGCGGAATACAACACCTTCCGCTGCGAGGGCT 274035 | | ||| | | || | ||| || | |||| ||| || ||||| |||| Sbjct 34874 TAATCTCGGATTTAAGATTCCTCTTAAAGCAACAGTACATCACTTTTCGCTGTCCAGGCT 34815 Query 274036 TGAACCCATCAACGACCGATGGAATACTGCGTTCCAAATCATACCGAGAGAACAAAATCA 274095 | || ||||| || | || || || || || | ||| | |||||||||||| | Sbjct 34814 TAAAACCATCCACCATGGAAGGTATGCTACGCACATTATCTGCCATAGAGAACAAAATGA 34755 Query 274096 GTTCCTTGTCAATGAAGTC 274114 | || |||| ||||||||| Sbjct 34754 GCTCTTTGTTAATGAAGTC 34736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046734117099866