Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vavraia_20culicis_20subsp._20floridensis_20[genbank_20GCA_5F00019279 5.1_202011-03-22] 379 sequences; 6,118,689 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq5 136 4e-27 >seq5 Length=183138 Score = 136 bits (150), Expect = 4e-27 Identities = 371/563 (66%), Gaps = 9/563 (2%) Strand=Plus/Minus Query 23507 AACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTA 23566 |||| ||||| | | |||| ||||| || || | ||||| || ||||| ||||| | Sbjct 59916 AACA-GCAAATTGATAATGCAGGCCCTCGTCACGTGATATCAACTCGTTAGAGAATGTAA 59858 Query 23567 ATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGA 23626 || ||||| | || |||||||| | ||| || || | || || ||||| ||||| Sbjct 59857 GACCGGGCATAAGACCGCGTTTTTTCAGCCAGAAGATAGATGCGAACGATCCACTAAAGA 59798 Query 23627 AAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAG 23686 | | ||||||||| |||||| || | || |||||| |||| | || | |||| Sbjct 59797 ACAGCCCCTCAACACACGCAAACGCAATAACACGTGTTGCAAAATCAGAATCTTTATCAT 59738 Query 23687 AAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTT 23746 |||||||| ||| | |||||| || || | || | |||| || | Sbjct 59737 TTATCCATTTAAAGCACCACTCAGCCTTTCTCTTCACCGTATTGATGTTGGCAATCGCAT 59678 Query 23747 TTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACA 23806 | || ||||| || ||||| | ||| | || || ||||| || || || |||| Sbjct 59677 TGAAAAGAAAGTCCTTCTCTTCCTGATCCTTAATGTACGTATCGATCAGCAACGAGTACA 59618 Query 23807 TTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACA 23866 ||||| || | || || || ||||||||| || ||||| || | || || | Sbjct 59617 TTTCACTGTGCACGTTCTCGATCATAATCTGAAAGCCGTAAAAGCAGCGCGCCTCTTTGA 59558 Query 23867 ATTGAACATCATTAAAAAA--TCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGC 23924 || || || | || ||| || | ||| ||||| || ||||| || || Sbjct 59557 GCTGCACCTCGCGCGAGAAGTTCTCCAAG--AGATTCTCGTTCACGATACCGTCCGATGC 59500 Query 23925 AGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCA--TCAGTTGATAATTTTTTC 23982 ||||||||| || || || || ||||||||| | ||| || ||| || ||| Sbjct 59499 AGCAAAGAATGCGAGCACGTACGATATAAAATGGCGCTCATCTCCGTT--CAACCGGTTC 59442 Query 23983 CAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCAAGGCA 24042 ||||||| |||||| ||||||| ||||||||| || |||||||| || || || || Sbjct 59441 CAATCATCAATATCCTTTGATAGATCAACTTCTTCCACTGTCCAGAATGATGATAATGCC 59382 Query 24043 CGCTTATACATTAGCCAAATATC 24065 | || ||||| |||| | ||| Sbjct 59381 TGTTTGTACATCTGCCATACATC 59359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521485529450600