Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vavraia_20culicis_20subsp._20floridensis_20[genbank_20GCA_5F00019279 5.1_202011-03-22] 379 sequences; 6,118,689 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq13 118 1e-21 seq57 107 2e-18 >seq13 Length=120561 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || | | ||||| |||||||||||||||||||| || ||||||||| Sbjct 71738 GCCACCCCGCAGCCTGAGCACCAAGTGCAGCGTGCTCTCCTTCTGTATATTATAGTCGCT 71797 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || || | || || ||||||||||| || ||||| || || || || || | || Sbjct 71798 CAGCGTCCGTCCATCCTCAAGCTGCTTGCCCGCAAATATGAGTCGTTGCTGATCGGGTGG 71857 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| || || ||| | | | |||||| ||||||||| Sbjct 71858 TATCCCCTCCTTGTCCTGTATCTTCGCCTTTACATTCTCGATGGTGTCGGACGACTCCAC 71917 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | ||||| || || || || || || |||||||| |||||||| Sbjct 71918 CTCAAGTGTTATTGTCTTGCCTGTGAGTGTTTTTACGAATATCTGCAT 71965 >seq57 Length=32437 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||| ||||||| ||| ||||||||||| ||||| || || || | || | || || Sbjct 25908 CACAAGATGCAACGTACTCTCCTTCTGTATGTTGTAATCACTCAGACTACGTCCATCCTC 25967 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 ||||||||||| || || || || ||||| ||||| | |||| || |||||||||| | Sbjct 25968 AAGCTGCTTGCCCGCAAAAATAAGCCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTT 26027 Query 41773 GATTTT-TTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831 ||||| || || | || | ||||| | ||| ||||| | ||| || || | Sbjct 26028 AATTTTATTTTTTACATTAC-TTATCGTGTCTGAAGGCTCGACCTCAAGCGTAATGGTCT 26086 Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||||| || ||||| ||||| || ||||| Sbjct 26087 TACCCGTGAGTGTCTTAACGAATATTTGCAT 26117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462301809834800