Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20glauca_20[genbank_20GCA_5F900079185.1_202016-04-15] 5,338 sequences; 48,746,359 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq236 116 3e-21 seq3256 113 4e-20 seq3208 113 4e-20 seq2275 87.8 2e-12 seq304 84.2 2e-11 >seq236 Length=318481 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| |||| || | || ||||| || || ||| ||| |||| || | Sbjct 112791 ATGCAAATCTTCGTCAAGACGCTTACAGGCAAGACAATCACCCTTGAAGTGGAATCCTCT 112732 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || | | | | || | |||||||| ||| || || |||||| | || ||| ||| Sbjct 112731 GACTCCATCGACAATGTCAAGCAAAAGATTCAAGACAAGGAAGGTATTCCTCCAGACCAA 112672 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | || |||||||| |||||||||||||||||| | || | | |||||||| Sbjct 112671 CAACGTCTCATCTTTGCCGGCAAACAACTGGAAGATGGCCGCACCCTCTCTGATTACAAC 112612 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGT 29170 ||||| |||||||| |||||||| |||| Sbjct 112611 ATTCAAAAGGAATCCACTCTTCATTTGGT 112583 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || |||| || |||| ||||| || || ||| ||| |||| || | Sbjct 111979 ATGCAAATCTTTGTCAAGACCCTGACTGGCAAGACAATCACCCTTGAAGTGGAATCCTCT 111920 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || | | | | | | |||||||| ||| ||||||||||| | || |||||| Sbjct 111919 GACTCTATCGACAACGTCAAGCAAAAGATTCAAGATAAAGAAGGCATCCCTCCTGATCAA 111860 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | ||||||||||| || ||||||||||||||| | || | | || ||||| Sbjct 111859 CAACGTCTTATCTTTGCCGGTAAACAACTGGAAGATGGCCGCACGCTCTCTGACTACAAC 111800 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGT 29170 || || || ||||| || || ||| |||| Sbjct 111799 ATCCAAAAAGAATCCACCCTGCACTTGGT 111771 >seq3256 Length=796958 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 || |||||||| ||| |||| || ||||| ||||| ||||| || |||| ||| | Sbjct 723171 AACATGCAAATCTTCGTCAAGACCTTGACTGGCAAGACCATCACTCTCGAAGTTGAATCT 723230 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 | || | | | | | | |||||||| ||| ||||| ||||| | ||| ||| Sbjct 723231 TCCGACTCCATCGACAACGTCAAGCAAAAGATTCAAGATAAGGAAGGAATCCCCCCAGAC 723290 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 || ||| |||| ||||| || ||||| ||| |||||||| | ||| | | || ||| Sbjct 723291 CAGCAACGACTCATCTTCGCCGGCAAGCAATTGGAAGATGGCCGCACTCTTTCTGACTAC 723350 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGT 29170 || ||||| ||||||||||||||||| |||| Sbjct 723351 AACATTCAAAAGGAATCTACTCTTCATCTGGT 723382 Score = 105 bits (116), Expect = 6e-18 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || |||| || ||||| ||||| ||||||||| ||| |||| || | Sbjct 723402 ATGCAAATCTTTGTCAAGACCTTGACTGGCAAGACCATTACCTTGGAAGTGGAATCCTCC 723461 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || | | | | | |||||||| || || || |||||| | ||| ||| ||| Sbjct 723462 GACTCTATCGATAACGTCAAGCAAAAGATCCAAGACAAGGAAGGTATCCCCCCAGACCAA 723521 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTACA 29139 ||| | | ||||| || |||||||||||||||||| || | || | | || |||| Sbjct 723522 CAACGCTTGATCTTCGCTGGCAAACAACTGGAAGATGGTCGCACGCTCT--CTGACTACA 723579 Query 29140 ATATTCAGAAGGAATCTACTCTTCACATGGT 29170 | || || ||||||||||||||||| |||| Sbjct 723580 ACATCCAAAAGGAATCTACTCTTCATTTGGT 723610 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || |||| || ||||| ||||| || || || ||| |||| || | Sbjct 723630 ATGCAAATCTTTGTCAAGACTTTGACTGGCAAGACAATCACTCTGGAAGTGGAATCCTCT 723689 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || | | | | || | |||||||| || || || |||||| | ||| ||||| Sbjct 723690 GACTCTATCGACAATGTGAAGCAAAAGATCCAAGACAAGGAAGGTATCCCCCCTGATCAG 723749 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | | ||||| || || ||||||||||||||| | ||| | | || ||||| Sbjct 723750 CAACGTTTGATCTTCGCTGGTAAACAACTGGAAGATGGCCGCACTCTCTCTGACTACAAC 723809 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGT 29170 || || |||||||||||||||||| |||| Sbjct 723810 ATCCAAAAGGAATCTACTCTTCACTTGGT 723838 Score = 100 bits (110), Expect = 2e-16 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| |||| || |||| || ||||| || ||| ||| |||| || | Sbjct 723858 ATGCAAATCTTCGTCAAGACCCTGACTGGTAAAACAATCACCCTTGAAGTGGAATCCTCT 723917 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || | | | | | | |||||||| || || || ||||| | ||| ||| ||| Sbjct 723918 GACTCTATCGACAACGTGAAGCAAAAGATCCAAGACAAGGAAGGAATCCCCCCAGACCAA 723977 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTACA 29139 ||| | | ||||| || |||||||||||||||||| || | || | | || |||| Sbjct 723978 CAACGCTTGATCTTCGCTGGCAAACAACTGGAAGATGGTCGCACGCTCT--CTGACTACA 724035 Query 29140 ATATTCAGAAGGAATCTACTCTTCACATGGT 29170 | || || |||||||||||||||||| |||| Sbjct 724036 ACATCCAAAAGGAATCTACTCTTCACCTGGT 724066 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || | || || ||||| || || || || || ||| |||| || | Sbjct 724086 ATGCAAATCTTTGTGAAGACCTTGACTGGTAAGACAATCACTCTGGAAGTGGAATCCTCG 724145 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || | | | | || | |||||||| || || || |||||| | ||| ||| ||| Sbjct 724146 GACTCTATCGACAATGTGAAGCAAAAGATCCAAGACAAGGAAGGTATCCCCCCAGACCAA 724205 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | | ||||| || || |||||| |||||||| | || | | || ||||| Sbjct 724206 CAACGTTTGATCTTCGCTGGTAAACAATTGGAAGATGGCCGTACGCTCTCTGACTACAAC 724265 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGT 29170 || || || ||||||||||||||| |||| Sbjct 724266 ATCCAAAAAGAATCTACTCTTCACTTGGT 724294 >seq3208 Length=262556 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| |||| || ||||| ||||| || || || ||| |||| || || Sbjct 84063 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACTATCACTCTGGAAGTGGAATCCTCA 84004 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || | | | | | | |||||||| ||| ||||||||||| | || || || Sbjct 84003 GACTCTATCGACAACGTCAAGCAAAAGATTCAAGATAAAGAAGGCATCCCTCCTGACCAG 83944 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | || |||||||| ||||||||||| |||||| ||| | | |||||||| Sbjct 83943 CAACGGCTCATCTTTGCAGGCAAACAACTAGAAGATGGTCGCACTCTCTCTGATTACAAC 83884 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || || |||||||| || || ||| ||||| | || |||||||| || Sbjct 83883 ATCCAAAAGGAATCAACCCTACACTTGGTGCTCCGTTTACGAGGTGG 83837 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || | ||||| | || ||||| |||||||| ||| |||| | | Sbjct 84291 ATGCAAATCTTTGTAAAAACTCTTACTGGCAAGACCATTACATTGGAAGTGGAATCTTCT 84232 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || | | | | | | || ||||| || ||||| ||||| | || || ||| Sbjct 84231 GACTCCATCGACAACGTCAAACAAAAGATCCAAGATAAGGAAGGCATCCCACCCGACCAA 84172 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || | ||||||||||| || ||||| || |||||| | || | |||| ||||| Sbjct 84171 CAGCGCCTTATCTTTGCCGGGAAACAGCTTGAAGATGGCCGCACACTCTCCGACTACAAC 84112 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTG 29171 ||||| |||||||| |||||||| ||||| Sbjct 84111 ATTCAAAAGGAATCGACTCTTCATCTGGTG 84082 >seq2275 Length=1761326 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 29040 AAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCG 29099 |||||||| || || || |||||| | || ||||| ||| | ||||||||||| Sbjct 759353 AAGCAAAAGATCCAAGACAAGGAAGGTATCCCTCCTGATCAGCAACGTCTTATCTTTGCT 759294 Query 29100 GGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACT 29159 ||||| ||||| ||||| | ||| || | || ||||| ||||| |||||||| ||| Sbjct 759293 GGCAAGCAACTCGAAGACGGCCGTACTTTGTCTGACTACAACATTCAAAAGGAATCCACT 759234 Query 29160 CTTCACATGGT 29170 |||||| |||| Sbjct 759233 CTTCACTTGGT 759223 >seq304 Length=62727 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 29040 AAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCG 29099 |||||||| ||| || || |||||| | || ||||| ||| | ||||||||||| Sbjct 38971 AAGCAAAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCAGCAACGTCTTATCTTTGCC 38912 Query 29100 GGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACT 29159 ||||| ||||| |||||| | || || |||| ||||| || || |||||||| ||| Sbjct 38911 GGCAAGCAACTCGAAGATGGCCGTACGTTGTCCGACTACAACATCCAAAAGGAATCCACT 38852 Query 29160 CTTCACATGGT 29170 || || |||| Sbjct 38851 CTCCATTTGGT 38841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428308133798390