Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20glauca_20[genbank_20GCA_5F900079185.1_202016-04-15] 5,338 sequences; 48,746,359 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq3208 109 5e-19 seq236 105 6e-18 seq2275 91.5 1e-13 seq3256 87.8 2e-12 >seq3208 Length=262556 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| || | || || || |||||||||||||| ||| | ||||| ||| || Sbjct 84082 CACCAGATGAAGAGTCGATTCCTTTTGAATGTTGTAGTCGGAGAGTGTGCGGCCATCTTC 84141 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||||| || || |||| || ||||| || ||||| || ||||| ||||| ||| Sbjct 84142 AAGCTGTTTCCCGGCAAAGATAAGGCGCTGTTGGTCGGGTGGGATGCCTTCCTTATCTTG 84201 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || |||||||| || | |||| || ||| | || || || | || | || || Sbjct 84202 GATCTTTTGTTTGACGTTGTCGATGGAGTCAGAAGATTCCACTTCCAATGTAATGGTCTT 84261 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| || |||||||||||||| || ||||| Sbjct 84262 GCCAGTAAGAGTTTTTACAAAGATTTGCAT 84291 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || || ||||| | | ||||||||| | || || || ||||| ||||||||||| Sbjct 83837 CCACCTCGTAAACGGAGCACCAAGTGTAGGGTTGATTCCTTTTGGATGTTGTAATCAGAG 83896 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | |||||| ||| || || ||||| || || ||||||| || ||||| || ||||| Sbjct 83897 AGAGTGCGACCATCTTCTAGTTGTTTGCCTGCAAAGATGAGCCGTTGCTGGTCAGGAGGG 83956 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 ||||| || || ||| ||| ||||| || || | |||| | ||| | | || || Sbjct 83957 ATGCCTTCTTTATCTTGAATCTTTTGCTTGACGTTGTCGATAGAGTCTGAGGATTCCACT 84016 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | || | || ||||| |||| ||| || || || |||||||| Sbjct 84017 TCCAGAGTGATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 84063 >seq236 Length=318481 Score = 105 bits (116), Expect = 6e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | || || || ||||||||||||||||| | ||||| ||| || Sbjct 112583 ACCAAATGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGAGAGGGTGCGGCCATCTTCC 112642 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || ||||| || || |||||||||| || || || ||||| || || ||||||||| | Sbjct 112643 AGTTGTTTGCCGGCAAAGATGAGACGTTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGA 112702 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || ||||| || || | |||| || ||| | | || || || | ||| | || ||| Sbjct 112703 ATCTTTTGCTTGACATTGTCGATGGAGTCAGAGGATTCCACTTCAAGGGTGATTGTCTTG 112762 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATGG 118740 || || || || || || || || ||||||| Sbjct 112763 CCTGTAAGCGTCTTGACGAAGATTTGCATGG 112793 >seq2275 Length=1761326 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || || || |||||||||||||| || || ||| || || ||| Sbjct 759223 ACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCGTCTTCG 759282 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || || ||||| |||| ||||| |||||||| ||||| || || ||||||||| Sbjct 759283 AGTTGCTTGCCAGCAAAGATAAGACGTTGCTGATCAGGAGGGATACCTTCCTTGTCTTGG 759342 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCT 118684 || ||||| || || | |||| | ||| | ||| Sbjct 759343 ATCTTTTGCTTGACGTTGTCGATAGAGTCGGAGCT 759377 >seq3256 Length=796958 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 ||||| || |||||||||||||| || | |||||| ||| || | || || || Sbjct 723370 GTAGATTCCTTTTGAATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAATTGCTTGCCG 723311 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| ||||||| || ||||| || || || || || ||||| ||| ||| ||||| || Sbjct 723310 GCGAAGATGAGTCGTTGCTGGTCTGGGGGGATTCCTTCCTTATCTTGAATCTTTTGCTTG 723251 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| || ||| | || || |||| || | || ||||| |||| || Sbjct 723250 ACGTTGTCGATGGAGTCGGAAGATTCAACTTCGAGAGTGATGGTCTTGCCAGTCAAGGTC 723191 Query 118722 TTTACAAAAATCTGCATG 118739 || || || || |||||| Sbjct 723190 TTGACGAAGATTTGCATG 723173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433802176349896