Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20glauca_20[genbank_20GCA_5F900079185.1_202016-04-15] 5,338 sequences; 48,746,359 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq3256 105 8e-18 seq3208 105 8e-18 seq236 98.7 1e-15 >seq3256 Length=796958 Score = 105 bits (116), Expect = 8e-18 Identities = 142/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||||||||| ||||| |||| ||||| || | || || | ||||| || ||||| Sbjct 723364 TCCTTTTGAATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAATTGCTTGCCGGCGAAG 723305 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 |||||||| |||||||| | || | | ||||| || || ||||| |||| ||| Sbjct 723304 ATGAGTCGTTGCTGGTCTGGGGGGATTCCTTCCTTATCTTGAATCTTTTGCTTGA-CGTT 723246 Query 43113 GCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | | |||| ||||| || |||| |||||||| ||||| || | ||||| || Sbjct 723245 GTCGATGGAGTCGGAAGATTCAACTTCGAGAGTGATGGTCTTGCCAGTCAAGGTCTTGAC 723186 Query 43172 AAAGATTTGCATTTT 43186 ||||||||||| || Sbjct 723185 GAAGATTTGCATGTT 723171 Score = 89.7 bits (98), Expect = 6e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||||||| | || |||||||| || ||||| |||| || || || | || || Sbjct 723610 ACCAAATGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAGAGCGTGCGACCATCTTCC 723551 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 || || || |||||||| || | || || ||||| | || | | |||||||| | Sbjct 723550 AGTTGTTTGCCAGCGAAGATCAAGCGTTGTTGGTCTGGGGGGATACCTTCCTTGTCTTGG 723491 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 43154 || ||||| |||| | | | | |||| |||||||| || | || ||||| ||| Sbjct 723490 ATCTTTTGCTTGACGTTATCGATAGAGTCGGAGGATTCCACTTCCAAGGTAATGGTCTTG 723431 Query 43155 CCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | ||||| |||||||||||||| Sbjct 723430 CCAGTCAAGGTCTTGACAAAGATTTGCAT 723402 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 |||||||| || ||||| |||| ||||| || | || || || || ||||||||||| Sbjct 723820 TCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCCAGTTGTTTACCAGCGAAG 723761 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || | || ||||| || | || | | |||||||| ||| ||||| || | | Sbjct 723760 ATCAAACGTTGCTGATCAGGGGGGATACCTTCCTTGTCTTGGATCTTTTGCTTCACATTG 723701 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | | ||| |||||||| || | ||||| || ||||| || | ||||| ||| Sbjct 723700 TCGATAGAGTCAGAGGATTCCACTTCCAGAGTGATTGTCTTGCCAGTCAAAGTCTTGACA 723641 Query 43173 AAGATTTGCAT 43183 ||||||||||| Sbjct 723640 AAGATTTGCAT 723630 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 || ||||| || ||||| |||| || ||| || | || || |||||||| || || || Sbjct 724504 TCTTTTTGGATGTTGTAGTCAGACAAAGTACGACCATCTTCGAGCTGCTTCCCGGCAAAG 724445 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || | || |||||||| | || | | |||||||| ||| ||||| |||| | Sbjct 724444 ATCAAACGTTGCTGGTCTGGGGGGATACCTTCCTTGTCTTGGATCTTTTGCTTGACGTTA 724385 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | | ||| |||||||| || | || || || ||||| || || ||||| ||| Sbjct 724384 TCGATAGAGTCAGAGGATTCCACTTCCAAAGTAATAGTCTTGCCAGTCAGGGTCTTGACA 724325 Query 43173 AAGATTTGCAT 43183 ||||||||||| Sbjct 724324 AAGATTTGCAT 724314 Score = 82.4 bits (90), Expect = 9e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 |||||||| || ||||| |||| || || || | || || || || || |||||||| Sbjct 724048 TCCTTTTGGATGTTGTAGTCAGAGAGCGTGCGACCATCTTCCAGTTGTTTGCCAGCGAAG 723989 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || | || || ||||| | || | | |||||||| ||| ||||| || | ||| Sbjct 723988 ATCAAGCGTTGTTGGTCTGGGGGGATTCCTTCCTTGTCTTGGATCTTTTGCTTCA-CGTT 723930 Query 43113 GCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | | ||| |||||||| || | ||||| ||||| || || || ||||| || Sbjct 723929 GTCGATAGAGTCAGAGGATTCCACTTCAAGGGTGATTGTTTTACCAGTCAGGGTCTTGAC 723870 Query 43172 AAAGATTTGCAT 43183 ||||||||||| Sbjct 723869 GAAGATTTGCAT 723858 >seq3208 Length=262556 Score = 105 bits (116), Expect = 8e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||||||||| ||||| || | || || || | || || ||||| || || || || Sbjct 84101 TCCTTTTGAATGTTGTAGTCGGAGAGTGTGCGGCCATCTTCAAGCTGTTTCCCGGCAAAG 84160 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || || ||||| ||||||| || | || ||||| || ||| |||||||||| ||| Sbjct 84161 ATAAGGCGCTGTTGGTCGGGTGGGATGCCTTCCTTATCTTGGATCTTTTGTTTGA-CGTT 84219 Query 43113 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | | ||| |||||||| || | || ||||| ||||| || || || ||||| Sbjct 84220 GTCGATGGAGTCAGAAGATTCCACTTCCAATGTAATGGTCTTGCCAGTAAGAGTTTTTAC 84279 Query 43172 AAAGATTTGCAT 43183 |||||||||||| Sbjct 84280 AAAGATTTGCAT 84291 >seq236 Length=318481 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||||||| | ||| ||||||||||| |||||||||| || || || | || || Sbjct 112583 ACCAAATGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGAGAGGGTGCGGCCATCTTCC 112642 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 || || || || || || ||||| || || ||||| | || | | |||||||| Sbjct 112643 AGTTGTTTGCCGGCAAAGATGAGACGTTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGA 112702 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 43154 || ||||| |||| | | | | ||| |||||||| || | ||||| || ||| Sbjct 112703 ATCTTTTGCTTGACATTGTCGATGGAGTCAGAGGATTCCACTTCAAGGGTGATTGTCTTG 112762 Query 43155 CCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || |||||||| || ||||||||||| Sbjct 112763 CCTGTAAGCGTCTTGACGAAGATTTGCAT 112791 Score = 86.0 bits (94), Expect = 7e-12 Identities = 162/236 (69%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 42949 CCTATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGT 43008 ||||||| || || | | ||| | ||||| |||| ||| || ||||| || |||| Sbjct 111745 CCTATTGACCACCACGGAGACGGAGGACCAAGTGCAGGGTGGATTCTTTTTGGATGTTGT 111804 Query 43009 AATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGT 43068 | |||| || || || | || || || || ||||| || || || || || || || | Sbjct 111805 AGTCAGAGAGCGTGCGGCCATCTTCCAGTTGTTTACCGGCAAAGATAAGACGTTGTTGAT 111864 Query 43069 CGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCC-ACCGTGTCGCTC 43127 | | || | || || || || || ||||| |||| ||| | | | | ||| Sbjct 111865 CAGGAGGGATGCCTTCTTTATCTTGAATCTTTTGCTTGA-CGTTGTCGATAGAGTCAGAG 111923 Query 43128 GATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||||||| || | ||||| || ||||| || || ||||| |||||||||||||| Sbjct 111924 GATTCCACTTCAAGGGTGATTGTCTTGCCAGTCAGGGTCTTGACAAAGATTTGCAT 111979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571779445470640